Hb_007218_050

Information

Type -
Description -
Location Contig7218: 78243-80037
Sequence    

Annotation

kegg
ID rcu:RCOM_1487310
description zinc finger protein, putative
nr
ID XP_002515932.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9LU14
description GDSL esterase/lipase APG OS=Arabidopsis thaliana GN=APG PE=1 SV=1
trembl
ID B9RQB3
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1487310 PE=4 SV=1
Gene Ontology
ID GO:0048046
description gdsl esterase lipase apg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55669: 78254-80015
cDNA
(Sanger)
(ID:Location)		 016_G20.ab1: 78254-79349 , 040_I23.ab1: 78254-79351

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007218_050 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_002307_140 0.0192591418 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
3 Hb_180535_010 0.0333461499 - - -
4 Hb_000816_180 0.0340720149 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
5 Hb_006711_030 0.0398305324 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
6 Hb_007576_090 0.0477821743 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
7 Hb_061336_010 0.0527890854 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000089_170 0.059229573 - - PREDICTED: uncharacterized protein LOC105134595 [Populus euphratica]
9 Hb_007044_240 0.0603370141 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
10 Hb_167188_020 0.0620455061 - - PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]
11 Hb_000840_080 0.065360217 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
12 Hb_072952_010 0.0703617541 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
13 Hb_000258_400 0.0720983372 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
14 Hb_002893_220 0.0750705861 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
15 Hb_000847_090 0.0767527797 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
16 Hb_000127_240 0.0772362352 - - SAUR39 [Populus tomentosa]
17 Hb_007760_060 0.0808075348 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
18 Hb_028486_020 0.084909852 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000556_060 0.0858588456 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
20 Hb_009847_010 0.0909079111 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]

Gene co-expression network

sample Hb_007218_050 Hb_007218_050 Hb_002307_140 Hb_002307_140 Hb_007218_050--Hb_002307_140 Hb_180535_010 Hb_180535_010 Hb_007218_050--Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_007218_050--Hb_000816_180 Hb_006711_030 Hb_006711_030 Hb_007218_050--Hb_006711_030 Hb_007576_090 Hb_007576_090 Hb_007218_050--Hb_007576_090 Hb_061336_010 Hb_061336_010 Hb_007218_050--Hb_061336_010 Hb_002307_140--Hb_006711_030 Hb_002307_140--Hb_180535_010 Hb_002307_140--Hb_000816_180 Hb_007044_240 Hb_007044_240 Hb_002307_140--Hb_007044_240 Hb_002307_140--Hb_007576_090 Hb_180535_010--Hb_000816_180 Hb_180535_010--Hb_007576_090 Hb_180535_010--Hb_061336_010 Hb_072952_010 Hb_072952_010 Hb_180535_010--Hb_072952_010 Hb_000816_180--Hb_061336_010 Hb_000816_180--Hb_007576_090 Hb_000816_180--Hb_072952_010 Hb_167188_020 Hb_167188_020 Hb_006711_030--Hb_167188_020 Hb_000089_170 Hb_000089_170 Hb_006711_030--Hb_000089_170 Hb_006711_030--Hb_007044_240 Hb_000840_080 Hb_000840_080 Hb_006711_030--Hb_000840_080 Hb_007576_090--Hb_061336_010 Hb_007760_060 Hb_007760_060 Hb_007576_090--Hb_007760_060 Hb_007576_090--Hb_072952_010 Hb_028486_020 Hb_028486_020 Hb_061336_010--Hb_028486_020 Hb_061336_010--Hb_072952_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 69.6437 36.4087 0.0284268 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0108795 22.2928

CAGE analysis