Hb_180535_010

Information

Type -
Description -
Location Contig180535: 4438-5750
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180535_010 0.0 - - -
2 Hb_000816_180 0.0180433899 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
3 Hb_007576_090 0.0200782811 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
4 Hb_061336_010 0.0293643185 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007218_050 0.0333461499 - - zinc finger protein, putative [Ricinus communis]
6 Hb_002307_140 0.0396375094 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
7 Hb_072952_010 0.0475879967 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
8 Hb_007760_060 0.0521497076 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
9 Hb_000127_240 0.0602398471 - - SAUR39 [Populus tomentosa]
10 Hb_000375_100 0.0648079116 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
11 Hb_000258_400 0.0654905067 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
12 Hb_028486_020 0.0665966932 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007044_240 0.067211934 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
14 Hb_006711_030 0.0683236352 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
15 Hb_000010_430 0.0716876224 - - Esterase precursor, putative [Ricinus communis]
16 Hb_000840_080 0.0791873485 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
17 Hb_000089_170 0.0838796972 - - PREDICTED: uncharacterized protein LOC105134595 [Populus euphratica]
18 Hb_006614_020 0.087259915 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
19 Hb_002893_220 0.0877151485 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
20 Hb_000847_090 0.0882202623 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_180535_010 Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_180535_010--Hb_000816_180 Hb_007576_090 Hb_007576_090 Hb_180535_010--Hb_007576_090 Hb_061336_010 Hb_061336_010 Hb_180535_010--Hb_061336_010 Hb_007218_050 Hb_007218_050 Hb_180535_010--Hb_007218_050 Hb_002307_140 Hb_002307_140 Hb_180535_010--Hb_002307_140 Hb_072952_010 Hb_072952_010 Hb_180535_010--Hb_072952_010 Hb_000816_180--Hb_061336_010 Hb_000816_180--Hb_007576_090 Hb_000816_180--Hb_007218_050 Hb_000816_180--Hb_002307_140 Hb_000816_180--Hb_072952_010 Hb_007576_090--Hb_061336_010 Hb_007760_060 Hb_007760_060 Hb_007576_090--Hb_007760_060 Hb_007576_090--Hb_072952_010 Hb_007576_090--Hb_007218_050 Hb_028486_020 Hb_028486_020 Hb_061336_010--Hb_028486_020 Hb_061336_010--Hb_072952_010 Hb_061336_010--Hb_007218_050 Hb_007218_050--Hb_002307_140 Hb_006711_030 Hb_006711_030 Hb_007218_050--Hb_006711_030 Hb_002307_140--Hb_006711_030 Hb_007044_240 Hb_007044_240 Hb_002307_140--Hb_007044_240 Hb_002307_140--Hb_007576_090 Hb_000375_100 Hb_000375_100 Hb_072952_010--Hb_000375_100 Hb_000258_400 Hb_000258_400 Hb_072952_010--Hb_000258_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 8.07635 4.16628 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.11036

CAGE analysis