Hb_006711_030

Information

Type -
Description -
Location Contig6711: 24019-26488
Sequence    

Annotation

kegg
ID pop:POPTR_0018s08900g
description POPTRDRAFT_809226; hypothetical protein
nr
ID XP_012076712.1
description PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
swissprot
ID Q9LV40
description Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1
trembl
ID A0A067KFD3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07259 PE=4 SV=1
Gene Ontology
ID GO:0005089
description rho guanine nucleotide exchange factor 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006711_030 0.0 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
2 Hb_002307_140 0.0315672694 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
3 Hb_167188_020 0.0372569744 - - PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]
4 Hb_007218_050 0.0398305324 - - zinc finger protein, putative [Ricinus communis]
5 Hb_000089_170 0.0408194577 - - PREDICTED: uncharacterized protein LOC105134595 [Populus euphratica]
6 Hb_007044_240 0.0643736831 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
7 Hb_000840_080 0.0654778225 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
8 Hb_180535_010 0.0683236352 - - -
9 Hb_000816_180 0.0684768125 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
10 Hb_012675_040 0.0692323521 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
11 Hb_000556_060 0.0721694105 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
12 Hb_132840_190 0.0738852077 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
13 Hb_000847_090 0.0740437849 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
14 Hb_007120_120 0.0762738016 - - protein binding protein, putative [Ricinus communis]
15 Hb_002893_220 0.0814134908 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
16 Hb_007576_090 0.0823325282 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
17 Hb_009847_010 0.082745617 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
18 Hb_061336_010 0.0880406016 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009663_020 0.0898655489 - - -
20 Hb_002259_120 0.0908397034 - - tonoplast intrinsic protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006711_030 Hb_006711_030 Hb_002307_140 Hb_002307_140 Hb_006711_030--Hb_002307_140 Hb_167188_020 Hb_167188_020 Hb_006711_030--Hb_167188_020 Hb_007218_050 Hb_007218_050 Hb_006711_030--Hb_007218_050 Hb_000089_170 Hb_000089_170 Hb_006711_030--Hb_000089_170 Hb_007044_240 Hb_007044_240 Hb_006711_030--Hb_007044_240 Hb_000840_080 Hb_000840_080 Hb_006711_030--Hb_000840_080 Hb_002307_140--Hb_007218_050 Hb_180535_010 Hb_180535_010 Hb_002307_140--Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_002307_140--Hb_000816_180 Hb_002307_140--Hb_007044_240 Hb_007576_090 Hb_007576_090 Hb_002307_140--Hb_007576_090 Hb_012675_040 Hb_012675_040 Hb_167188_020--Hb_012675_040 Hb_167188_020--Hb_000089_170 Hb_002259_120 Hb_002259_120 Hb_167188_020--Hb_002259_120 Hb_002893_220 Hb_002893_220 Hb_167188_020--Hb_002893_220 Hb_167188_020--Hb_002307_140 Hb_007218_050--Hb_180535_010 Hb_007218_050--Hb_000816_180 Hb_007218_050--Hb_007576_090 Hb_061336_010 Hb_061336_010 Hb_007218_050--Hb_061336_010 Hb_000089_170--Hb_002307_140 Hb_000089_170--Hb_007218_050 Hb_000089_170--Hb_012675_040 Hb_132840_190 Hb_132840_190 Hb_000089_170--Hb_132840_190 Hb_000556_060 Hb_000556_060 Hb_007044_240--Hb_000556_060 Hb_007044_240--Hb_007218_050 Hb_009847_010 Hb_009847_010 Hb_007044_240--Hb_009847_010 Hb_007044_240--Hb_180535_010 Hb_000840_080--Hb_007218_050 Hb_000840_080--Hb_002307_140 Hb_000840_080--Hb_167188_020 Hb_000840_080--Hb_000089_170 Hb_000840_080--Hb_000816_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.115917 0.0645854 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.047115

CAGE analysis