Hb_167188_020

Information

Type -
Description -
Location Contig167188: 17557-18414
Sequence    

Annotation

kegg
ID rcu:RCOM_1378880
description phd finger protein, putative
nr
ID XP_012072577.1
description PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]
swissprot
ID A8MS78
description Uncharacterized protein At1g05835 OS=Arabidopsis thaliana GN=At1g05835 PE=2 SV=1
trembl
ID A0A067L060
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05762 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15436: 17868-18655
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_167188_020 0.0 - - PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]
2 Hb_006711_030 0.0372569744 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
3 Hb_012675_040 0.0379016807 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
4 Hb_000089_170 0.0414310903 - - PREDICTED: uncharacterized protein LOC105134595 [Populus euphratica]
5 Hb_002259_120 0.0537552165 - - tonoplast intrinsic protein, putative [Ricinus communis]
6 Hb_002893_220 0.0597814202 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
7 Hb_002307_140 0.0608419465 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
8 Hb_007218_050 0.0620455061 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000739_010 0.0627685679 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
10 Hb_001646_030 0.0640692792 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
11 Hb_000840_080 0.0719903635 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
12 Hb_001300_190 0.0739070499 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012807_040 0.078022528 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
14 Hb_000510_250 0.0788860951 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
15 Hb_000816_180 0.0827664298 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
16 Hb_000130_340 0.0853943314 - - -
17 Hb_132840_190 0.0899333921 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
18 Hb_007120_120 0.0900234135 - - protein binding protein, putative [Ricinus communis]
19 Hb_180535_010 0.0900627243 - - -
20 Hb_000189_300 0.0907930277 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_167188_020 Hb_167188_020 Hb_006711_030 Hb_006711_030 Hb_167188_020--Hb_006711_030 Hb_012675_040 Hb_012675_040 Hb_167188_020--Hb_012675_040 Hb_000089_170 Hb_000089_170 Hb_167188_020--Hb_000089_170 Hb_002259_120 Hb_002259_120 Hb_167188_020--Hb_002259_120 Hb_002893_220 Hb_002893_220 Hb_167188_020--Hb_002893_220 Hb_002307_140 Hb_002307_140 Hb_167188_020--Hb_002307_140 Hb_006711_030--Hb_002307_140 Hb_007218_050 Hb_007218_050 Hb_006711_030--Hb_007218_050 Hb_006711_030--Hb_000089_170 Hb_007044_240 Hb_007044_240 Hb_006711_030--Hb_007044_240 Hb_000840_080 Hb_000840_080 Hb_006711_030--Hb_000840_080 Hb_000739_010 Hb_000739_010 Hb_012675_040--Hb_000739_010 Hb_001646_030 Hb_001646_030 Hb_012675_040--Hb_001646_030 Hb_012675_040--Hb_002259_120 Hb_012807_040 Hb_012807_040 Hb_012675_040--Hb_012807_040 Hb_001300_190 Hb_001300_190 Hb_012675_040--Hb_001300_190 Hb_000089_170--Hb_002307_140 Hb_000089_170--Hb_007218_050 Hb_000089_170--Hb_012675_040 Hb_132840_190 Hb_132840_190 Hb_000089_170--Hb_132840_190 Hb_002259_120--Hb_001646_030 Hb_002259_120--Hb_000739_010 Hb_000130_340 Hb_000130_340 Hb_002259_120--Hb_000130_340 Hb_002259_120--Hb_001300_190 Hb_001221_550 Hb_001221_550 Hb_002893_220--Hb_001221_550 Hb_002893_220--Hb_002259_120 Hb_002893_220--Hb_000130_340 Hb_000816_180 Hb_000816_180 Hb_002893_220--Hb_000816_180 Hb_003592_040 Hb_003592_040 Hb_002893_220--Hb_003592_040 Hb_002307_140--Hb_007218_050 Hb_180535_010 Hb_180535_010 Hb_002307_140--Hb_180535_010 Hb_002307_140--Hb_000816_180 Hb_002307_140--Hb_007044_240 Hb_007576_090 Hb_007576_090 Hb_002307_140--Hb_007576_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 10.5742 4.96904 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 4.59343

CAGE analysis