Hb_012675_040

Information

Type -
Description -
Location Contig12675: 38981-43255
Sequence    

Annotation

kegg
ID rcu:RCOM_0610400
description hypothetical protein
nr
ID XP_012089385.1
description PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JIS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08077: 41617-42047 , PASA_asmbl_08078: 39234-42975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012675_040 0.0 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
2 Hb_000739_010 0.0365843877 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
3 Hb_167188_020 0.0379016807 - - PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]
4 Hb_001646_030 0.0388160668 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
5 Hb_002259_120 0.0408139072 - - tonoplast intrinsic protein, putative [Ricinus communis]
6 Hb_012807_040 0.0473227579 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
7 Hb_001300_190 0.057075275 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000510_250 0.0611888705 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
9 Hb_000189_300 0.0621553379 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
10 Hb_001253_050 0.0638933104 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
11 Hb_088689_010 0.0645715326 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
12 Hb_008173_160 0.0646606382 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
13 Hb_000089_170 0.0653321736 - - PREDICTED: uncharacterized protein LOC105134595 [Populus euphratica]
14 Hb_000160_020 0.0675092974 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
15 Hb_002973_100 0.0683910381 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
16 Hb_006711_030 0.0692323521 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
17 Hb_007894_200 0.0748843979 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
18 Hb_001728_070 0.0757236205 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
19 Hb_000130_340 0.0757962528 - - -
20 Hb_000144_130 0.0758570971 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012675_040 Hb_012675_040 Hb_000739_010 Hb_000739_010 Hb_012675_040--Hb_000739_010 Hb_167188_020 Hb_167188_020 Hb_012675_040--Hb_167188_020 Hb_001646_030 Hb_001646_030 Hb_012675_040--Hb_001646_030 Hb_002259_120 Hb_002259_120 Hb_012675_040--Hb_002259_120 Hb_012807_040 Hb_012807_040 Hb_012675_040--Hb_012807_040 Hb_001300_190 Hb_001300_190 Hb_012675_040--Hb_001300_190 Hb_000739_010--Hb_001646_030 Hb_000739_010--Hb_002259_120 Hb_000739_010--Hb_012807_040 Hb_001253_050 Hb_001253_050 Hb_000739_010--Hb_001253_050 Hb_000160_020 Hb_000160_020 Hb_000739_010--Hb_000160_020 Hb_006711_030 Hb_006711_030 Hb_167188_020--Hb_006711_030 Hb_000089_170 Hb_000089_170 Hb_167188_020--Hb_000089_170 Hb_167188_020--Hb_002259_120 Hb_002893_220 Hb_002893_220 Hb_167188_020--Hb_002893_220 Hb_002307_140 Hb_002307_140 Hb_167188_020--Hb_002307_140 Hb_001646_030--Hb_002259_120 Hb_001646_030--Hb_012807_040 Hb_001646_030--Hb_001253_050 Hb_001646_030--Hb_000160_020 Hb_000130_340 Hb_000130_340 Hb_002259_120--Hb_000130_340 Hb_002259_120--Hb_001300_190 Hb_088689_010 Hb_088689_010 Hb_012807_040--Hb_088689_010 Hb_008173_160 Hb_008173_160 Hb_012807_040--Hb_008173_160 Hb_002973_100 Hb_002973_100 Hb_012807_040--Hb_002973_100 Hb_012807_040--Hb_001253_050 Hb_012807_040--Hb_000160_020 Hb_001300_190--Hb_000739_010 Hb_001300_190--Hb_001646_030 Hb_004553_050 Hb_004553_050 Hb_001300_190--Hb_004553_050 Hb_001300_190--Hb_012807_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.024589 22.2892 9.90732 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 11.3784

CAGE analysis