Hb_000160_020

Information

Type -
Description -
Location Contig160: 22952-24364
Sequence    

Annotation

kegg
ID rcu:RCOM_0466770
description Gamma-interferon-inducible lysosomal thiol reductase precursor, putative
nr
ID XP_012092720.1
description PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
swissprot
ID P13284
description Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3
trembl
ID A0A067JL95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08854 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14304: 22908-24357 , PASA_asmbl_14305: 23100-24353
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_020 0.0 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
2 Hb_002973_100 0.0264704631 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
3 Hb_008173_160 0.0275278006 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
4 Hb_088689_010 0.0275703968 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
5 Hb_012807_040 0.0302297776 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
6 Hb_001253_050 0.0308651483 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
7 Hb_007894_200 0.0367105881 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
8 Hb_013394_070 0.0423865002 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
9 Hb_000189_300 0.0428857985 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
10 Hb_000739_010 0.0451274989 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
11 Hb_001646_030 0.0466378277 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
12 Hb_000777_080 0.046918663 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
13 Hb_001728_070 0.0488719806 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
14 Hb_001206_110 0.0554139556 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
15 Hb_031862_210 0.0592449035 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
16 Hb_001789_220 0.0648325917 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
17 Hb_145502_010 0.0649204861 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
18 Hb_012675_040 0.0675092974 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
19 Hb_147976_010 0.0678066048 - - -
20 Hb_004735_030 0.068455101 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]

Gene co-expression network

sample Hb_000160_020 Hb_000160_020 Hb_002973_100 Hb_002973_100 Hb_000160_020--Hb_002973_100 Hb_008173_160 Hb_008173_160 Hb_000160_020--Hb_008173_160 Hb_088689_010 Hb_088689_010 Hb_000160_020--Hb_088689_010 Hb_012807_040 Hb_012807_040 Hb_000160_020--Hb_012807_040 Hb_001253_050 Hb_001253_050 Hb_000160_020--Hb_001253_050 Hb_007894_200 Hb_007894_200 Hb_000160_020--Hb_007894_200 Hb_002973_100--Hb_008173_160 Hb_002973_100--Hb_088689_010 Hb_002973_100--Hb_007894_200 Hb_002973_100--Hb_012807_040 Hb_013394_070 Hb_013394_070 Hb_002973_100--Hb_013394_070 Hb_008173_160--Hb_088689_010 Hb_008173_160--Hb_012807_040 Hb_008173_160--Hb_007894_200 Hb_000777_080 Hb_000777_080 Hb_008173_160--Hb_000777_080 Hb_088689_010--Hb_012807_040 Hb_088689_010--Hb_007894_200 Hb_088689_010--Hb_000777_080 Hb_012807_040--Hb_001253_050 Hb_000739_010 Hb_000739_010 Hb_012807_040--Hb_000739_010 Hb_001253_050--Hb_002973_100 Hb_001253_050--Hb_008173_160 Hb_001253_050--Hb_088689_010 Hb_001253_050--Hb_007894_200 Hb_007894_200--Hb_000777_080 Hb_007894_200--Hb_013394_070 Hb_001728_070 Hb_001728_070 Hb_007894_200--Hb_001728_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0435568 0 20.5587 7.97707 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 13.5728

CAGE analysis