Hb_001253_050

Information

Type transcription factor
Description TF Family: HB
Location Contig1253: 192071-197669
Sequence    

Annotation

kegg
ID rcu:RCOM_0486690
description homeobox protein, putative
nr
ID XP_002524172.1
description homeobox protein, putative [Ricinus communis]
swissprot
ID Q94C37
description Homeobox-leucine zipper protein HDG2 OS=Arabidopsis thaliana GN=HDG2 PE=2 SV=1
trembl
ID B9SDV3
description Homeobox protein, putative OS=Ricinus communis GN=RCOM_0486690 PE=4 SV=1
Gene Ontology
ID GO:0008289
description homeobox-leucine zipper protein hdg2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07779: 191123-197602 , PASA_asmbl_07780: 192132-192273 , PASA_asmbl_07781: 192013-192922
cDNA
(Sanger)
(ID:Location)		 035_E02.ab1: 194079-195368

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001253_050 0.0 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
2 Hb_002973_100 0.0278884262 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
3 Hb_008173_160 0.0292981992 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
4 Hb_088689_010 0.0293497997 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
5 Hb_012807_040 0.0302265738 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
6 Hb_000160_020 0.0308651483 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
7 Hb_007894_200 0.0389924874 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
8 Hb_000739_010 0.0412410849 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
9 Hb_001646_030 0.0423611361 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
10 Hb_013394_070 0.0451791354 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
11 Hb_000777_080 0.0509549544 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
12 Hb_001728_070 0.0530508997 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
13 Hb_031862_210 0.0532579481 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
14 Hb_001206_110 0.0549108186 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
15 Hb_000189_300 0.0552302393 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
16 Hb_001789_220 0.0579233464 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
17 Hb_145502_010 0.0581616528 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
18 Hb_001300_190 0.0638845948 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012675_040 0.0638933104 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
20 Hb_002259_120 0.0641945301 - - tonoplast intrinsic protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001253_050 Hb_001253_050 Hb_002973_100 Hb_002973_100 Hb_001253_050--Hb_002973_100 Hb_008173_160 Hb_008173_160 Hb_001253_050--Hb_008173_160 Hb_088689_010 Hb_088689_010 Hb_001253_050--Hb_088689_010 Hb_012807_040 Hb_012807_040 Hb_001253_050--Hb_012807_040 Hb_000160_020 Hb_000160_020 Hb_001253_050--Hb_000160_020 Hb_007894_200 Hb_007894_200 Hb_001253_050--Hb_007894_200 Hb_002973_100--Hb_008173_160 Hb_002973_100--Hb_088689_010 Hb_002973_100--Hb_007894_200 Hb_002973_100--Hb_012807_040 Hb_013394_070 Hb_013394_070 Hb_002973_100--Hb_013394_070 Hb_002973_100--Hb_000160_020 Hb_008173_160--Hb_088689_010 Hb_008173_160--Hb_012807_040 Hb_008173_160--Hb_007894_200 Hb_000777_080 Hb_000777_080 Hb_008173_160--Hb_000777_080 Hb_008173_160--Hb_000160_020 Hb_088689_010--Hb_012807_040 Hb_088689_010--Hb_007894_200 Hb_088689_010--Hb_000777_080 Hb_088689_010--Hb_000160_020 Hb_012807_040--Hb_000160_020 Hb_000739_010 Hb_000739_010 Hb_012807_040--Hb_000739_010 Hb_000160_020--Hb_007894_200 Hb_007894_200--Hb_000777_080 Hb_007894_200--Hb_013394_070 Hb_001728_070 Hb_001728_070 Hb_007894_200--Hb_001728_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0111429 26.7348 10.0314 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.015349 0.0120783 0 0.00479213 17.2489

CAGE analysis