Hb_000777_080

Information

Type -
Description -
Location Contig777: 105547-105945
Sequence    

Annotation

kegg
ID pop:POPTR_0015s15410g
description hypothetical protein
nr
ID XP_006374698.1
description hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
swissprot
ID Q93VA3
description Cytochrome c6, chloroplastic OS=Arabidopsis thaliana GN=petJ PE=1 SV=1
trembl
ID U5FN68
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s15410g PE=4 SV=1
Gene Ontology
ID GO:0009055
description cytochrome chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57861: 105531-105924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000777_080 0.0 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
2 Hb_001728_070 0.0139301692 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
3 Hb_013394_070 0.0195958436 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
4 Hb_004735_030 0.0251340656 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
5 Hb_007894_200 0.0269581865 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
6 Hb_088689_010 0.0269854262 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
7 Hb_008173_160 0.0269924653 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
8 Hb_002973_100 0.0275006882 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
9 Hb_001206_110 0.0306305607 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
10 Hb_001141_180 0.0315120056 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
11 Hb_012807_040 0.0427980051 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
12 Hb_000160_020 0.046918663 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
13 Hb_001253_050 0.0509549544 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
14 Hb_001031_140 0.0521040837 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
15 Hb_004724_090 0.0545663487 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
16 Hb_006117_030 0.0563518041 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002043_020 0.0637730454 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
18 Hb_000557_070 0.0645918688 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
19 Hb_000189_300 0.0652404301 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
20 Hb_001789_220 0.0658588564 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]

Gene co-expression network

sample Hb_000777_080 Hb_000777_080 Hb_001728_070 Hb_001728_070 Hb_000777_080--Hb_001728_070 Hb_013394_070 Hb_013394_070 Hb_000777_080--Hb_013394_070 Hb_004735_030 Hb_004735_030 Hb_000777_080--Hb_004735_030 Hb_007894_200 Hb_007894_200 Hb_000777_080--Hb_007894_200 Hb_088689_010 Hb_088689_010 Hb_000777_080--Hb_088689_010 Hb_008173_160 Hb_008173_160 Hb_000777_080--Hb_008173_160 Hb_001728_070--Hb_088689_010 Hb_001728_070--Hb_008173_160 Hb_001141_180 Hb_001141_180 Hb_001728_070--Hb_001141_180 Hb_001206_110 Hb_001206_110 Hb_001728_070--Hb_001206_110 Hb_001728_070--Hb_007894_200 Hb_002973_100 Hb_002973_100 Hb_013394_070--Hb_002973_100 Hb_013394_070--Hb_007894_200 Hb_013394_070--Hb_008173_160 Hb_013394_070--Hb_088689_010 Hb_013394_070--Hb_001728_070 Hb_004735_030--Hb_001141_180 Hb_004735_030--Hb_013394_070 Hb_004735_030--Hb_001728_070 Hb_004724_090 Hb_004724_090 Hb_004735_030--Hb_004724_090 Hb_004735_030--Hb_001206_110 Hb_007894_200--Hb_002973_100 Hb_007894_200--Hb_008173_160 Hb_007894_200--Hb_088689_010 Hb_088689_010--Hb_008173_160 Hb_088689_010--Hb_002973_100 Hb_012807_040 Hb_012807_040 Hb_088689_010--Hb_012807_040 Hb_000160_020 Hb_000160_020 Hb_088689_010--Hb_000160_020 Hb_008173_160--Hb_002973_100 Hb_008173_160--Hb_012807_040 Hb_008173_160--Hb_000160_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 9.35003 4.45237 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 7.44134

CAGE analysis