Hb_007894_200

Information

Type -
Description -
Location Contig7894: 152846-153760
Sequence    

Annotation

kegg
ID rcu:RCOM_0585700
description ubiquitin-conjugating enzyme variant, putative
nr
ID XP_002522972.1
description ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
swissprot
ID Q9SZ42
description Fatty acid desaturase 4, chloroplastic OS=Arabidopsis thaliana GN=FAD4 PE=2 SV=1
trembl
ID B9SAF3
description Ubiquitin-conjugating enzyme variant, putative OS=Ricinus communis GN=RCOM_0585700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_200 0.0 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
2 Hb_002973_100 0.0205900012 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
3 Hb_008173_160 0.0208020679 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
4 Hb_088689_010 0.0208216574 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
5 Hb_000777_080 0.0269581865 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
6 Hb_013394_070 0.0274213497 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
7 Hb_001728_070 0.0301414072 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
8 Hb_012807_040 0.0328997197 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
9 Hb_000160_020 0.0367105881 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
10 Hb_001253_050 0.0389924874 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
11 Hb_001206_110 0.0403209198 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
12 Hb_004735_030 0.0472822245 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
13 Hb_001141_180 0.052764555 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
14 Hb_000739_010 0.0594087817 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
15 Hb_000189_300 0.0600907431 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
16 Hb_001646_030 0.0618561072 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
17 Hb_001789_220 0.0632700162 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
18 Hb_006117_030 0.0650586393 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001031_140 0.0686691027 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
20 Hb_004724_090 0.0701096445 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]

Gene co-expression network

sample Hb_007894_200 Hb_007894_200 Hb_002973_100 Hb_002973_100 Hb_007894_200--Hb_002973_100 Hb_008173_160 Hb_008173_160 Hb_007894_200--Hb_008173_160 Hb_088689_010 Hb_088689_010 Hb_007894_200--Hb_088689_010 Hb_000777_080 Hb_000777_080 Hb_007894_200--Hb_000777_080 Hb_013394_070 Hb_013394_070 Hb_007894_200--Hb_013394_070 Hb_001728_070 Hb_001728_070 Hb_007894_200--Hb_001728_070 Hb_002973_100--Hb_008173_160 Hb_002973_100--Hb_088689_010 Hb_012807_040 Hb_012807_040 Hb_002973_100--Hb_012807_040 Hb_002973_100--Hb_013394_070 Hb_000160_020 Hb_000160_020 Hb_002973_100--Hb_000160_020 Hb_008173_160--Hb_088689_010 Hb_008173_160--Hb_012807_040 Hb_008173_160--Hb_000777_080 Hb_008173_160--Hb_000160_020 Hb_088689_010--Hb_012807_040 Hb_088689_010--Hb_000777_080 Hb_088689_010--Hb_000160_020 Hb_000777_080--Hb_001728_070 Hb_000777_080--Hb_013394_070 Hb_004735_030 Hb_004735_030 Hb_000777_080--Hb_004735_030 Hb_013394_070--Hb_008173_160 Hb_013394_070--Hb_088689_010 Hb_013394_070--Hb_001728_070 Hb_001728_070--Hb_088689_010 Hb_001728_070--Hb_008173_160 Hb_001141_180 Hb_001141_180 Hb_001728_070--Hb_001141_180 Hb_001206_110 Hb_001206_110 Hb_001728_070--Hb_001206_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 32.2095 13.9505 0.0495872 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 23.4562

CAGE analysis