Hb_012807_040

Information

Type -
Description -
Location Contig12807: 41235-41540
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01390g
description hypothetical protein
nr
ID XP_006378950.1
description hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G5M3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s01390g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08678: 41091-41886
cDNA
(Sanger)
(ID:Location)		 031_G01.ab1: 41091-41886 , 045_G13.ab1: 41091-41853 , 053_A11.ab1: 41091-41811

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012807_040 0.0 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
2 Hb_088689_010 0.0183689318 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
3 Hb_008173_160 0.01844799 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
4 Hb_002973_100 0.0220887628 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
5 Hb_001253_050 0.0302265738 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
6 Hb_000160_020 0.0302297776 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
7 Hb_000739_010 0.031558778 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
8 Hb_007894_200 0.0328997197 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
9 Hb_001646_030 0.0347849212 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
10 Hb_001728_070 0.0383561086 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
11 Hb_000777_080 0.0427980051 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
12 Hb_013394_070 0.0464520559 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
13 Hb_012675_040 0.0473227579 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
14 Hb_001206_110 0.0477267197 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
15 Hb_000189_300 0.0499519687 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
16 Hb_002259_120 0.0573130013 - - tonoplast intrinsic protein, putative [Ricinus communis]
17 Hb_001300_190 0.0581236646 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001141_180 0.0661029287 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
19 Hb_004735_030 0.0678971221 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
20 Hb_001789_220 0.0710388517 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]

Gene co-expression network

sample Hb_012807_040 Hb_012807_040 Hb_088689_010 Hb_088689_010 Hb_012807_040--Hb_088689_010 Hb_008173_160 Hb_008173_160 Hb_012807_040--Hb_008173_160 Hb_002973_100 Hb_002973_100 Hb_012807_040--Hb_002973_100 Hb_001253_050 Hb_001253_050 Hb_012807_040--Hb_001253_050 Hb_000160_020 Hb_000160_020 Hb_012807_040--Hb_000160_020 Hb_000739_010 Hb_000739_010 Hb_012807_040--Hb_000739_010 Hb_088689_010--Hb_008173_160 Hb_088689_010--Hb_002973_100 Hb_007894_200 Hb_007894_200 Hb_088689_010--Hb_007894_200 Hb_000777_080 Hb_000777_080 Hb_088689_010--Hb_000777_080 Hb_088689_010--Hb_000160_020 Hb_008173_160--Hb_002973_100 Hb_008173_160--Hb_007894_200 Hb_008173_160--Hb_000777_080 Hb_008173_160--Hb_000160_020 Hb_002973_100--Hb_007894_200 Hb_013394_070 Hb_013394_070 Hb_002973_100--Hb_013394_070 Hb_002973_100--Hb_000160_020 Hb_001253_050--Hb_002973_100 Hb_001253_050--Hb_008173_160 Hb_001253_050--Hb_088689_010 Hb_001253_050--Hb_000160_020 Hb_001253_050--Hb_007894_200 Hb_000160_020--Hb_007894_200 Hb_001646_030 Hb_001646_030 Hb_000739_010--Hb_001646_030 Hb_002259_120 Hb_002259_120 Hb_000739_010--Hb_002259_120 Hb_012675_040 Hb_012675_040 Hb_000739_010--Hb_012675_040 Hb_000739_010--Hb_001253_050 Hb_000739_010--Hb_000160_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 17.3075 7.3588 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 10.9506

CAGE analysis