Hb_008173_160

Information

Type -
Description -
Location Contig8173: 90814-94003
Sequence    

Annotation

kegg
ID mdm:103453254
description putative ribonuclease H protein At1g65750
nr
ID XP_008391021.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID M5XSK0
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016553mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59475: 91227-91625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008173_160 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
2 Hb_088689_010 0.0001326024 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
3 Hb_002973_100 0.0051423435 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
4 Hb_012807_040 0.01844799 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
5 Hb_007894_200 0.0208020679 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
6 Hb_000777_080 0.0269924653 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
7 Hb_000160_020 0.0275278006 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
8 Hb_001728_070 0.0277611688 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
9 Hb_013394_070 0.0280196321 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
10 Hb_001253_050 0.0292981992 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
11 Hb_001206_110 0.0388291701 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
12 Hb_000739_010 0.0476403902 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
13 Hb_001646_030 0.0502789957 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
14 Hb_004735_030 0.0516964545 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
15 Hb_000189_300 0.053616939 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
16 Hb_001141_180 0.055170538 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
17 Hb_001789_220 0.062101848 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
18 Hb_012675_040 0.0646606382 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
19 Hb_031862_210 0.0677559475 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
20 Hb_006117_030 0.0691767147 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008173_160 Hb_008173_160 Hb_088689_010 Hb_088689_010 Hb_008173_160--Hb_088689_010 Hb_002973_100 Hb_002973_100 Hb_008173_160--Hb_002973_100 Hb_012807_040 Hb_012807_040 Hb_008173_160--Hb_012807_040 Hb_007894_200 Hb_007894_200 Hb_008173_160--Hb_007894_200 Hb_000777_080 Hb_000777_080 Hb_008173_160--Hb_000777_080 Hb_000160_020 Hb_000160_020 Hb_008173_160--Hb_000160_020 Hb_088689_010--Hb_002973_100 Hb_088689_010--Hb_012807_040 Hb_088689_010--Hb_007894_200 Hb_088689_010--Hb_000777_080 Hb_088689_010--Hb_000160_020 Hb_002973_100--Hb_007894_200 Hb_002973_100--Hb_012807_040 Hb_013394_070 Hb_013394_070 Hb_002973_100--Hb_013394_070 Hb_002973_100--Hb_000160_020 Hb_001253_050 Hb_001253_050 Hb_012807_040--Hb_001253_050 Hb_012807_040--Hb_000160_020 Hb_000739_010 Hb_000739_010 Hb_012807_040--Hb_000739_010 Hb_007894_200--Hb_000777_080 Hb_007894_200--Hb_013394_070 Hb_001728_070 Hb_001728_070 Hb_007894_200--Hb_001728_070 Hb_000777_080--Hb_001728_070 Hb_000777_080--Hb_013394_070 Hb_004735_030 Hb_004735_030 Hb_000777_080--Hb_004735_030 Hb_000160_020--Hb_001253_050 Hb_000160_020--Hb_007894_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0947647 0.0403646 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0658587

CAGE analysis