Hb_013394_070

Information

Type -
Description -
Location Contig13394: 76397-76926
Sequence    

Annotation

kegg
ID pop:POPTR_0013s12090g
description hypothetical protein
nr
ID XP_006376332.1
description hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
swissprot
ID Q8LC53
description Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana GN=EPF2 PE=1 SV=1
trembl
ID B9MW47
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12090g PE=4 SV=1
Gene Ontology
ID GO:0010052
description protein epidermal patterning factor 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09547: 76349-77062
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013394_070 0.0 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
2 Hb_000777_080 0.0195958436 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
3 Hb_002973_100 0.0249179674 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
4 Hb_007894_200 0.0274213497 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
5 Hb_008173_160 0.0280196321 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
6 Hb_088689_010 0.0281023545 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
7 Hb_001728_070 0.0324351389 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
8 Hb_004735_030 0.0327998103 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
9 Hb_001206_110 0.0409655787 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
10 Hb_000160_020 0.0423865002 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
11 Hb_001253_050 0.0451791354 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
12 Hb_012807_040 0.0464520559 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
13 Hb_006117_030 0.0470060169 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001141_180 0.0490933003 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
15 Hb_002965_170 0.0554231632 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
16 Hb_004724_090 0.0567801816 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
17 Hb_001789_220 0.0575500167 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
18 Hb_001519_140 0.0583751777 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
19 Hb_001205_140 0.0595289108 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
20 Hb_145502_010 0.0655836995 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]

Gene co-expression network

sample Hb_013394_070 Hb_013394_070 Hb_000777_080 Hb_000777_080 Hb_013394_070--Hb_000777_080 Hb_002973_100 Hb_002973_100 Hb_013394_070--Hb_002973_100 Hb_007894_200 Hb_007894_200 Hb_013394_070--Hb_007894_200 Hb_008173_160 Hb_008173_160 Hb_013394_070--Hb_008173_160 Hb_088689_010 Hb_088689_010 Hb_013394_070--Hb_088689_010 Hb_001728_070 Hb_001728_070 Hb_013394_070--Hb_001728_070 Hb_000777_080--Hb_001728_070 Hb_004735_030 Hb_004735_030 Hb_000777_080--Hb_004735_030 Hb_000777_080--Hb_007894_200 Hb_000777_080--Hb_088689_010 Hb_000777_080--Hb_008173_160 Hb_002973_100--Hb_008173_160 Hb_002973_100--Hb_088689_010 Hb_002973_100--Hb_007894_200 Hb_012807_040 Hb_012807_040 Hb_002973_100--Hb_012807_040 Hb_000160_020 Hb_000160_020 Hb_002973_100--Hb_000160_020 Hb_007894_200--Hb_008173_160 Hb_007894_200--Hb_088689_010 Hb_007894_200--Hb_001728_070 Hb_008173_160--Hb_088689_010 Hb_008173_160--Hb_012807_040 Hb_008173_160--Hb_000160_020 Hb_088689_010--Hb_012807_040 Hb_088689_010--Hb_000160_020 Hb_001728_070--Hb_088689_010 Hb_001728_070--Hb_008173_160 Hb_001141_180 Hb_001141_180 Hb_001728_070--Hb_001141_180 Hb_001206_110 Hb_001206_110 Hb_001728_070--Hb_001206_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.17032 0.922023 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.73188

CAGE analysis