Hb_001728_070

Information

Type -
Description -
Location Contig1728: 56166-58463
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G109400g
description hypothetical protein
nr
ID XP_012070025.1
description PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID Q8LD60
description Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001728_070 0.0 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
2 Hb_000777_080 0.0139301692 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
3 Hb_088689_010 0.027689948 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
4 Hb_008173_160 0.0277611688 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
5 Hb_001141_180 0.0280193128 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
6 Hb_001206_110 0.0287844468 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
7 Hb_007894_200 0.0301414072 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
8 Hb_002973_100 0.0306344247 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
9 Hb_013394_070 0.0324351389 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
10 Hb_004735_030 0.0336790239 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
11 Hb_012807_040 0.0383561086 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
12 Hb_001031_140 0.0436984557 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
13 Hb_000160_020 0.0488719806 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
14 Hb_001253_050 0.0530508997 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
15 Hb_004724_090 0.0614437999 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
16 Hb_000189_300 0.0616254322 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
17 Hb_002043_020 0.0616650022 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
18 Hb_006117_030 0.0677729626 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008147_020 0.0680695682 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
20 Hb_000739_010 0.0697890234 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]

Gene co-expression network

sample Hb_001728_070 Hb_001728_070 Hb_000777_080 Hb_000777_080 Hb_001728_070--Hb_000777_080 Hb_088689_010 Hb_088689_010 Hb_001728_070--Hb_088689_010 Hb_008173_160 Hb_008173_160 Hb_001728_070--Hb_008173_160 Hb_001141_180 Hb_001141_180 Hb_001728_070--Hb_001141_180 Hb_001206_110 Hb_001206_110 Hb_001728_070--Hb_001206_110 Hb_007894_200 Hb_007894_200 Hb_001728_070--Hb_007894_200 Hb_013394_070 Hb_013394_070 Hb_000777_080--Hb_013394_070 Hb_004735_030 Hb_004735_030 Hb_000777_080--Hb_004735_030 Hb_000777_080--Hb_007894_200 Hb_000777_080--Hb_088689_010 Hb_000777_080--Hb_008173_160 Hb_088689_010--Hb_008173_160 Hb_002973_100 Hb_002973_100 Hb_088689_010--Hb_002973_100 Hb_012807_040 Hb_012807_040 Hb_088689_010--Hb_012807_040 Hb_088689_010--Hb_007894_200 Hb_000160_020 Hb_000160_020 Hb_088689_010--Hb_000160_020 Hb_008173_160--Hb_002973_100 Hb_008173_160--Hb_012807_040 Hb_008173_160--Hb_007894_200 Hb_008173_160--Hb_000160_020 Hb_001141_180--Hb_004735_030 Hb_001031_140 Hb_001031_140 Hb_001141_180--Hb_001031_140 Hb_001141_180--Hb_000777_080 Hb_001141_180--Hb_001206_110 Hb_001141_180--Hb_013394_070 Hb_001206_110--Hb_000777_080 Hb_001206_110--Hb_088689_010 Hb_001206_110--Hb_008173_160 Hb_001206_110--Hb_007894_200 Hb_001206_110--Hb_002973_100 Hb_007894_200--Hb_002973_100 Hb_007894_200--Hb_013394_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.763723 0.38279 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.584716

CAGE analysis