Hb_001031_140

Information

Type -
Description -
Location Contig1031: 189855-194952
Sequence    

Annotation

kegg
ID rcu:RCOM_0610850
description zinc finger protein, putative
nr
ID XP_012089390.1
description PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
swissprot
ID Q9M8Y5
description GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana GN=LTL1 PE=2 SV=1
trembl
ID A0A067JII7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23584 PE=4 SV=1
Gene Ontology
ID GO:0016788
description li-tolerant lipase 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01278: 189754-192148 , PASA_asmbl_01280: 194388-196091 , PASA_asmbl_01281: 194388-195133 , PASA_asmbl_01282: 194391-196045
cDNA
(Sanger)
(ID:Location)		 001_D12.ab1: 194390-195395 , 001_L04.ab1: 194387-195383 , 003_C10.ab1: 194388-195408 , 004_B10.ab1: 194392-195428 , 005_H16.ab1: 194392-195418 , 008_E04.ab1: 189802-190841 , 008_G08.ab1: 189822-190620 , 008_H19.ab1: 194388-195276 , 013_K01.ab1: 194388-195336 , 014_E05.ab1: 194390-195403 , 015_G12.ab1: 194388-195293 , 016_F08.ab1: 189792-190611 , 020_D08.ab1: 194388-195418 , 020_H08.ab1: 194388-195404 , 021_H08.ab1: 189802-190861 , 021_O06.ab1: 194388-195380 , 023_K24.ab1: 194388-195346 , 024_F16.ab1: 194388-195265 , 025_G19.ab1: 194387-195418 , 026_A10.ab1: 194390-195301 , 027_K20.ab1: 194389-195280 , 028_G13.ab1: 194392-195325 , 028_I14.ab1: 194390-195338 , 028_M05.ab1: 194388-195281 , 030_P20.ab1: 194390-195383 , 032_A06.ab1: 194390-195404 , 032_I10.ab1: 194820-195792 , 032_L20.ab1: 194388-195133 , 032_P02.ab1: 194388-195324 , 035_B04.ab1: 194388-195325 , 035_K11.ab1: 194388-195317 , 036_H23.ab1: 194388-195299 , 038_H24.ab1: 194387-195416 , 039_K16.ab1: 194390-195400 , 042_H03.ab1: 194388-195427 , 042_K07.ab1: 194388-195404 , 042_M21.ab1: 189792-190805 , 043_P16.ab1: 189775-190681 , 047_C19.ab1: 194388-195429 , 048_D16.ab1: 194388-195408 , 048_O08.ab1: 194388-195310 , 049_A10.ab1: 194389-195281 , 053_D18.ab1: 194388-195360 , 053_H09.ab1: 194476-195271

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001031_140 0.0 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
2 Hb_001141_180 0.0276849168 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
3 Hb_001642_020 0.0374915863 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
4 Hb_001728_070 0.0436984557 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
5 Hb_016734_100 0.0457773108 - - -
6 Hb_001206_110 0.0495866445 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
7 Hb_002043_020 0.0509612729 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
8 Hb_004735_030 0.051056054 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
9 Hb_000487_080 0.0515002689 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
10 Hb_001426_020 0.0518704948 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
11 Hb_000777_080 0.0521040837 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
12 Hb_008147_020 0.0600233649 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
13 Hb_004724_090 0.0670688373 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
14 Hb_007894_200 0.0686691027 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
15 Hb_088689_010 0.0695300915 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
16 Hb_008173_160 0.0696153147 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
17 Hb_013394_070 0.0705348437 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
18 Hb_002973_100 0.0728419821 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
19 Hb_000557_070 0.0735321493 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
20 Hb_012035_010 0.0747217847 - - hypothetical protein JCGZ_21143 [Jatropha curcas]

Gene co-expression network

sample Hb_001031_140 Hb_001031_140 Hb_001141_180 Hb_001141_180 Hb_001031_140--Hb_001141_180 Hb_001642_020 Hb_001642_020 Hb_001031_140--Hb_001642_020 Hb_001728_070 Hb_001728_070 Hb_001031_140--Hb_001728_070 Hb_016734_100 Hb_016734_100 Hb_001031_140--Hb_016734_100 Hb_001206_110 Hb_001206_110 Hb_001031_140--Hb_001206_110 Hb_002043_020 Hb_002043_020 Hb_001031_140--Hb_002043_020 Hb_004735_030 Hb_004735_030 Hb_001141_180--Hb_004735_030 Hb_001141_180--Hb_001728_070 Hb_000777_080 Hb_000777_080 Hb_001141_180--Hb_000777_080 Hb_001141_180--Hb_001206_110 Hb_013394_070 Hb_013394_070 Hb_001141_180--Hb_013394_070 Hb_001642_020--Hb_016734_100 Hb_001426_020 Hb_001426_020 Hb_001642_020--Hb_001426_020 Hb_000487_080 Hb_000487_080 Hb_001642_020--Hb_000487_080 Hb_001642_020--Hb_001141_180 Hb_001652_100 Hb_001652_100 Hb_001642_020--Hb_001652_100 Hb_001728_070--Hb_000777_080 Hb_088689_010 Hb_088689_010 Hb_001728_070--Hb_088689_010 Hb_008173_160 Hb_008173_160 Hb_001728_070--Hb_008173_160 Hb_001728_070--Hb_001206_110 Hb_007894_200 Hb_007894_200 Hb_001728_070--Hb_007894_200 Hb_016734_100--Hb_001426_020 Hb_016734_100--Hb_000487_080 Hb_007120_120 Hb_007120_120 Hb_016734_100--Hb_007120_120 Hb_009663_020 Hb_009663_020 Hb_016734_100--Hb_009663_020 Hb_001206_110--Hb_000777_080 Hb_001206_110--Hb_088689_010 Hb_001206_110--Hb_008173_160 Hb_001206_110--Hb_007894_200 Hb_002973_100 Hb_002973_100 Hb_001206_110--Hb_002973_100 Hb_008147_020 Hb_008147_020 Hb_002043_020--Hb_008147_020 Hb_002078_330 Hb_002078_330 Hb_002043_020--Hb_002078_330 Hb_002043_020--Hb_001206_110 Hb_000557_070 Hb_000557_070 Hb_002043_020--Hb_000557_070 Hb_002043_020--Hb_001141_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.155153 307.095 196.491 0 0.145401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.10925 258.977

CAGE analysis