Hb_002043_020

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2043: 53744-55171
Sequence    

Annotation

kegg
ID rcu:RCOM_1486290
description DNA binding protein, putative
nr
ID XP_012069256.1
description PREDICTED: transcription factor bHLH87 [Jatropha curcas]
swissprot
ID Q8S3D2
description Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1
trembl
ID B9RQ81
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1486290 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh87

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20966: 53055-55953 , PASA_asmbl_20967: 55117-55860
cDNA
(Sanger)
(ID:Location)		 035_B16.ab1: 54847-55953

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002043_020 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
2 Hb_008147_020 0.0298950552 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
3 Hb_002078_330 0.04099468 - - lipid binding protein, putative [Ricinus communis]
4 Hb_001206_110 0.0490576914 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
5 Hb_001031_140 0.0509612729 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
6 Hb_000557_070 0.052894129 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
7 Hb_001141_180 0.0539092287 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
8 Hb_004724_090 0.055350915 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
9 Hb_002704_060 0.0584788786 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
10 Hb_004735_030 0.0609176543 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
11 Hb_001728_070 0.0616650022 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
12 Hb_000777_080 0.0637730454 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
13 Hb_041433_010 0.0652363336 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
14 Hb_000985_160 0.0675267743 - - PREDICTED: cytochrome P450 724B1-like [Jatropha curcas]
15 Hb_001642_020 0.0679006255 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
16 Hb_143629_180 0.0695055248 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
17 Hb_006117_030 0.0695961136 - - conserved hypothetical protein [Ricinus communis]
18 Hb_068580_010 0.0704779395 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
19 Hb_001789_220 0.0731675444 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
20 Hb_000538_090 0.0746635572 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]

Gene co-expression network

sample Hb_002043_020 Hb_002043_020 Hb_008147_020 Hb_008147_020 Hb_002043_020--Hb_008147_020 Hb_002078_330 Hb_002078_330 Hb_002043_020--Hb_002078_330 Hb_001206_110 Hb_001206_110 Hb_002043_020--Hb_001206_110 Hb_001031_140 Hb_001031_140 Hb_002043_020--Hb_001031_140 Hb_000557_070 Hb_000557_070 Hb_002043_020--Hb_000557_070 Hb_001141_180 Hb_001141_180 Hb_002043_020--Hb_001141_180 Hb_008147_020--Hb_002078_330 Hb_002704_060 Hb_002704_060 Hb_008147_020--Hb_002704_060 Hb_008147_020--Hb_001206_110 Hb_008147_020--Hb_001031_140 Hb_000058_180 Hb_000058_180 Hb_008147_020--Hb_000058_180 Hb_002078_330--Hb_002704_060 Hb_143629_180 Hb_143629_180 Hb_002078_330--Hb_143629_180 Hb_000538_090 Hb_000538_090 Hb_002078_330--Hb_000538_090 Hb_034235_010 Hb_034235_010 Hb_002078_330--Hb_034235_010 Hb_001728_070 Hb_001728_070 Hb_001206_110--Hb_001728_070 Hb_000777_080 Hb_000777_080 Hb_001206_110--Hb_000777_080 Hb_088689_010 Hb_088689_010 Hb_001206_110--Hb_088689_010 Hb_008173_160 Hb_008173_160 Hb_001206_110--Hb_008173_160 Hb_007894_200 Hb_007894_200 Hb_001206_110--Hb_007894_200 Hb_002973_100 Hb_002973_100 Hb_001206_110--Hb_002973_100 Hb_001031_140--Hb_001141_180 Hb_001642_020 Hb_001642_020 Hb_001031_140--Hb_001642_020 Hb_001031_140--Hb_001728_070 Hb_016734_100 Hb_016734_100 Hb_001031_140--Hb_016734_100 Hb_001031_140--Hb_001206_110 Hb_004724_090 Hb_004724_090 Hb_000557_070--Hb_004724_090 Hb_006117_030 Hb_006117_030 Hb_000557_070--Hb_006117_030 Hb_004993_020 Hb_004993_020 Hb_000557_070--Hb_004993_020 Hb_068580_010 Hb_068580_010 Hb_000557_070--Hb_068580_010 Hb_000731_150 Hb_000731_150 Hb_000557_070--Hb_000731_150 Hb_002743_010 Hb_002743_010 Hb_000557_070--Hb_002743_010 Hb_004735_030 Hb_004735_030 Hb_001141_180--Hb_004735_030 Hb_001141_180--Hb_001728_070 Hb_001141_180--Hb_000777_080 Hb_001141_180--Hb_001206_110 Hb_013394_070 Hb_013394_070 Hb_001141_180--Hb_013394_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0154277 1.85326 1.08789 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0110993 1.61866

CAGE analysis