Hb_143629_180

Information

Type transcription factor
Description TF Family: MYB
Location Contig143629: 119812-121710
Sequence    

Annotation

kegg
ID pop:POPTR_0005s00340g
description myb family transcription factor family protein
nr
ID XP_006382251.1
description myb family transcription factor family protein [Populus trichocarpa]
swissprot
ID Q8LPH6
description Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1
trembl
ID B9N405
description Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0005s00340g PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb86-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11504: 119973-121789
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_180 0.0 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
2 Hb_002078_330 0.0513120383 - - lipid binding protein, putative [Ricinus communis]
3 Hb_002043_020 0.0695055248 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
4 Hb_000538_090 0.0698350169 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
5 Hb_017434_040 0.0731724178 - - PREDICTED: uncharacterized oxidoreductase At4g09670-like [Jatropha curcas]
6 Hb_002704_060 0.0746436783 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
7 Hb_008147_020 0.0754451844 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
8 Hb_002028_020 0.0799047239 - - acyltransferase, putative [Ricinus communis]
9 Hb_009588_010 0.0821153467 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
10 Hb_012395_240 0.0832707122 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
11 Hb_000058_180 0.0836746689 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
12 Hb_012098_100 0.085335289 - - zinc finger protein, putative [Ricinus communis]
13 Hb_149644_030 0.0858302726 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
14 Hb_189208_070 0.0865208248 - - 10-deacetylbaccatin III 10-O-acetyltransferase, putative [Ricinus communis]
15 Hb_004724_090 0.0872818533 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
16 Hb_001488_230 0.0884181764 - - PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
17 Hb_000608_270 0.0887118855 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000042_280 0.0891108311 - - chlorophyll A/B binding protein, putative [Ricinus communis]
19 Hb_034235_010 0.0905365386 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
20 Hb_000000_390 0.0907251673 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]

Gene co-expression network

sample Hb_143629_180 Hb_143629_180 Hb_002078_330 Hb_002078_330 Hb_143629_180--Hb_002078_330 Hb_002043_020 Hb_002043_020 Hb_143629_180--Hb_002043_020 Hb_000538_090 Hb_000538_090 Hb_143629_180--Hb_000538_090 Hb_017434_040 Hb_017434_040 Hb_143629_180--Hb_017434_040 Hb_002704_060 Hb_002704_060 Hb_143629_180--Hb_002704_060 Hb_008147_020 Hb_008147_020 Hb_143629_180--Hb_008147_020 Hb_002078_330--Hb_002043_020 Hb_002078_330--Hb_002704_060 Hb_002078_330--Hb_008147_020 Hb_002078_330--Hb_000538_090 Hb_034235_010 Hb_034235_010 Hb_002078_330--Hb_034235_010 Hb_002043_020--Hb_008147_020 Hb_001206_110 Hb_001206_110 Hb_002043_020--Hb_001206_110 Hb_001031_140 Hb_001031_140 Hb_002043_020--Hb_001031_140 Hb_000557_070 Hb_000557_070 Hb_002043_020--Hb_000557_070 Hb_001141_180 Hb_001141_180 Hb_002043_020--Hb_001141_180 Hb_000000_390 Hb_000000_390 Hb_000538_090--Hb_000000_390 Hb_000058_180 Hb_000058_180 Hb_000538_090--Hb_000058_180 Hb_012395_240 Hb_012395_240 Hb_000538_090--Hb_012395_240 Hb_000538_090--Hb_008147_020 Hb_000608_270 Hb_000608_270 Hb_017434_040--Hb_000608_270 Hb_001571_100 Hb_001571_100 Hb_017434_040--Hb_001571_100 Hb_002028_020 Hb_002028_020 Hb_017434_040--Hb_002028_020 Hb_000808_130 Hb_000808_130 Hb_017434_040--Hb_000808_130 Hb_041433_010 Hb_041433_010 Hb_017434_040--Hb_041433_010 Hb_002704_060--Hb_008147_020 Hb_002704_060--Hb_002043_020 Hb_002704_060--Hb_034235_010 Hb_002704_060--Hb_000538_090 Hb_008147_020--Hb_001206_110 Hb_008147_020--Hb_001031_140 Hb_008147_020--Hb_000058_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.333872 12.8023 8.84402 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.13747 0.0216315 0.0408037 0.0948434 12.272

CAGE analysis