Hb_002078_330

Information

Type -
Description -
Location Contig2078: 230707-232291
Sequence    

Annotation

kegg
ID rcu:RCOM_1079910
description lipid binding protein, putative
nr
ID XP_002514908.1
description lipid binding protein, putative [Ricinus communis]
swissprot
ID Q9C7F7
description Non-specific lipid transfer protein GPI-anchored 1 OS=Arabidopsis thaliana GN=LTPG1 PE=1 SV=1
trembl
ID B9RMD9
description Lipid binding protein, putative OS=Ricinus communis GN=RCOM_1079910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21457: 230657-232601
cDNA
(Sanger)
(ID:Location)		 007_C23.ab1: 230898-232500 , 008_L10.ab1: 230821-232388 , 009_K02.ab1: 230821-232423 , 016_L16.ab1: 230821-232320 , 018_N12.ab1: 230821-232426 , 020_J20.ab1: 230799-232460 , 026_P22.ab1: 230802-232305 , 030_G11.ab1: 230821-232309 , 031_O13.ab1: 230821-232414 , 033_H22.ab1: 230799-232341 , 035_G11.ab1: 230821-232408 , 037_I19.ab1: 230821-232460

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_330 0.0 - - lipid binding protein, putative [Ricinus communis]
2 Hb_002043_020 0.04099468 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
3 Hb_002704_060 0.045435358 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
4 Hb_008147_020 0.0491712413 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
5 Hb_143629_180 0.0513120383 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
6 Hb_000538_090 0.0606920081 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
7 Hb_034235_010 0.0667926993 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
8 Hb_000152_350 0.0679852912 - - PREDICTED: enolase [Jatropha curcas]
9 Hb_149644_030 0.0702402754 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
10 Hb_000985_160 0.0716286308 - - PREDICTED: cytochrome P450 724B1-like [Jatropha curcas]
11 Hb_000557_070 0.0720840397 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
12 Hb_002028_020 0.0728745808 - - acyltransferase, putative [Ricinus communis]
13 Hb_041433_010 0.0747259554 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
14 Hb_004724_090 0.0747304153 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
15 Hb_000000_390 0.0768694386 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
16 Hb_009588_010 0.0770261875 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
17 Hb_001571_100 0.0774503902 - - chlorophyll A-B binding family protein [Populus trichocarpa]
18 Hb_007850_020 0.0784674742 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001031_140 0.0789656532 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
20 Hb_068580_010 0.0792857555 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_002078_330 Hb_002078_330 Hb_002043_020 Hb_002043_020 Hb_002078_330--Hb_002043_020 Hb_002704_060 Hb_002704_060 Hb_002078_330--Hb_002704_060 Hb_008147_020 Hb_008147_020 Hb_002078_330--Hb_008147_020 Hb_143629_180 Hb_143629_180 Hb_002078_330--Hb_143629_180 Hb_000538_090 Hb_000538_090 Hb_002078_330--Hb_000538_090 Hb_034235_010 Hb_034235_010 Hb_002078_330--Hb_034235_010 Hb_002043_020--Hb_008147_020 Hb_001206_110 Hb_001206_110 Hb_002043_020--Hb_001206_110 Hb_001031_140 Hb_001031_140 Hb_002043_020--Hb_001031_140 Hb_000557_070 Hb_000557_070 Hb_002043_020--Hb_000557_070 Hb_001141_180 Hb_001141_180 Hb_002043_020--Hb_001141_180 Hb_002704_060--Hb_008147_020 Hb_002704_060--Hb_002043_020 Hb_002704_060--Hb_034235_010 Hb_002704_060--Hb_000538_090 Hb_002704_060--Hb_143629_180 Hb_008147_020--Hb_001206_110 Hb_008147_020--Hb_001031_140 Hb_000058_180 Hb_000058_180 Hb_008147_020--Hb_000058_180 Hb_143629_180--Hb_002043_020 Hb_143629_180--Hb_000538_090 Hb_017434_040 Hb_017434_040 Hb_143629_180--Hb_017434_040 Hb_143629_180--Hb_008147_020 Hb_000000_390 Hb_000000_390 Hb_000538_090--Hb_000000_390 Hb_000538_090--Hb_000058_180 Hb_012395_240 Hb_012395_240 Hb_000538_090--Hb_012395_240 Hb_000538_090--Hb_008147_020 Hb_149644_030 Hb_149644_030 Hb_034235_010--Hb_149644_030 Hb_001266_010 Hb_001266_010 Hb_034235_010--Hb_001266_010 Hb_041433_010 Hb_041433_010 Hb_034235_010--Hb_041433_010 Hb_009476_030 Hb_009476_030 Hb_034235_010--Hb_009476_030 Hb_000152_350 Hb_000152_350 Hb_034235_010--Hb_000152_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.160189 2.5553 146.443 91.3994 0 0.0398607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.146648 0.0576493 0.103661 2.05806 135.671

CAGE analysis