Hb_002704_060

Information

Type -
Description -
Location Contig2704: 73703-77745
Sequence    

Annotation

kegg
ID rcu:RCOM_0246300
description ATP binding protein, putative (EC:1.3.1.74)
nr
ID XP_012073038.1
description PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
swissprot
ID Q9C9N5
description Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=2 SV=1
trembl
ID A0A067KQU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06817 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable inactive leucine-rich repeat receptor-like protein kinase at1g66830

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28366: 74953-77529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002704_060 0.0 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
2 Hb_002078_330 0.045435358 - - lipid binding protein, putative [Ricinus communis]
3 Hb_008147_020 0.053254135 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
4 Hb_002043_020 0.0584788786 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
5 Hb_034235_010 0.0654623563 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_000538_090 0.0741027716 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
7 Hb_143629_180 0.0746436783 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
8 Hb_000152_350 0.080403288 - - PREDICTED: enolase [Jatropha curcas]
9 Hb_041433_010 0.0829347995 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
10 Hb_000058_180 0.0833923202 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
11 Hb_000000_390 0.0846231183 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
12 Hb_008021_060 0.0849084622 - - Squalene monooxygenase, putative [Ricinus communis]
13 Hb_001206_110 0.0852694826 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
14 Hb_149644_030 0.0860282598 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
15 Hb_000985_160 0.086802975 - - PREDICTED: cytochrome P450 724B1-like [Jatropha curcas]
16 Hb_001031_140 0.0883688261 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
17 Hb_012035_010 0.0898813115 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
18 Hb_002276_220 0.0905212505 - - PREDICTED: uncharacterized protein LOC105640684 isoform X2 [Jatropha curcas]
19 Hb_001642_020 0.0912983852 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
20 Hb_007850_020 0.0923827491 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002704_060 Hb_002704_060 Hb_002078_330 Hb_002078_330 Hb_002704_060--Hb_002078_330 Hb_008147_020 Hb_008147_020 Hb_002704_060--Hb_008147_020 Hb_002043_020 Hb_002043_020 Hb_002704_060--Hb_002043_020 Hb_034235_010 Hb_034235_010 Hb_002704_060--Hb_034235_010 Hb_000538_090 Hb_000538_090 Hb_002704_060--Hb_000538_090 Hb_143629_180 Hb_143629_180 Hb_002704_060--Hb_143629_180 Hb_002078_330--Hb_002043_020 Hb_002078_330--Hb_008147_020 Hb_002078_330--Hb_143629_180 Hb_002078_330--Hb_000538_090 Hb_002078_330--Hb_034235_010 Hb_008147_020--Hb_002043_020 Hb_001206_110 Hb_001206_110 Hb_008147_020--Hb_001206_110 Hb_001031_140 Hb_001031_140 Hb_008147_020--Hb_001031_140 Hb_000058_180 Hb_000058_180 Hb_008147_020--Hb_000058_180 Hb_002043_020--Hb_001206_110 Hb_002043_020--Hb_001031_140 Hb_000557_070 Hb_000557_070 Hb_002043_020--Hb_000557_070 Hb_001141_180 Hb_001141_180 Hb_002043_020--Hb_001141_180 Hb_149644_030 Hb_149644_030 Hb_034235_010--Hb_149644_030 Hb_001266_010 Hb_001266_010 Hb_034235_010--Hb_001266_010 Hb_041433_010 Hb_041433_010 Hb_034235_010--Hb_041433_010 Hb_009476_030 Hb_009476_030 Hb_034235_010--Hb_009476_030 Hb_000152_350 Hb_000152_350 Hb_034235_010--Hb_000152_350 Hb_000000_390 Hb_000000_390 Hb_000538_090--Hb_000000_390 Hb_000538_090--Hb_000058_180 Hb_012395_240 Hb_012395_240 Hb_000538_090--Hb_012395_240 Hb_000538_090--Hb_008147_020 Hb_000538_090--Hb_143629_180 Hb_143629_180--Hb_002043_020 Hb_017434_040 Hb_017434_040 Hb_143629_180--Hb_017434_040 Hb_143629_180--Hb_008147_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0304796 0.164513 9.16111 5.36305 0 0.00979544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0545115 0 0.130149 7.44517

CAGE analysis