Hb_000000_390

Information

Type -
Description -
Location Contig0: 649242-659484
Sequence    

Annotation

kegg
ID pop:POPTR_0014s04120g
description hypothetical protein
nr
ID XP_012071789.1
description PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
swissprot
ID Q7VG78
description Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1
trembl
ID A0A067L1V7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04395 PE=4 SV=1
Gene Ontology
ID GO:0008725
description glutamine amidotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00094: 658050-658324
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_390 0.0 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
2 Hb_000538_090 0.0481539841 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
3 Hb_051663_010 0.0752187459 - - receptor-kinase, putative [Ricinus communis]
4 Hb_004635_120 0.0755675421 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
5 Hb_012395_240 0.0767889511 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
6 Hb_002078_330 0.0768694386 - - lipid binding protein, putative [Ricinus communis]
7 Hb_001638_200 0.0776405145 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
8 Hb_000156_110 0.0787692226 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
9 Hb_000922_200 0.0793629232 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
10 Hb_032920_020 0.0800921745 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
11 Hb_000152_350 0.0801275907 - - PREDICTED: enolase [Jatropha curcas]
12 Hb_002835_310 0.080988138 - - ATP binding protein, putative [Ricinus communis]
13 Hb_012035_010 0.0835597498 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
14 Hb_002704_060 0.0846231183 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
15 Hb_007850_020 0.086860782 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001516_010 0.0878842021 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
17 Hb_002609_120 0.0881754809 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
18 Hb_000058_180 0.0882303086 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
19 Hb_008147_020 0.0892197907 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
20 Hb_143629_180 0.0907251673 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000000_390 Hb_000000_390 Hb_000538_090 Hb_000538_090 Hb_000000_390--Hb_000538_090 Hb_051663_010 Hb_051663_010 Hb_000000_390--Hb_051663_010 Hb_004635_120 Hb_004635_120 Hb_000000_390--Hb_004635_120 Hb_012395_240 Hb_012395_240 Hb_000000_390--Hb_012395_240 Hb_002078_330 Hb_002078_330 Hb_000000_390--Hb_002078_330 Hb_001638_200 Hb_001638_200 Hb_000000_390--Hb_001638_200 Hb_000538_090--Hb_002078_330 Hb_000058_180 Hb_000058_180 Hb_000538_090--Hb_000058_180 Hb_000538_090--Hb_012395_240 Hb_008147_020 Hb_008147_020 Hb_000538_090--Hb_008147_020 Hb_143629_180 Hb_143629_180 Hb_000538_090--Hb_143629_180 Hb_001516_010 Hb_001516_010 Hb_051663_010--Hb_001516_010 Hb_111985_100 Hb_111985_100 Hb_051663_010--Hb_111985_100 Hb_000922_200 Hb_000922_200 Hb_051663_010--Hb_000922_200 Hb_032920_020 Hb_032920_020 Hb_051663_010--Hb_032920_020 Hb_009486_050 Hb_009486_050 Hb_051663_010--Hb_009486_050 Hb_004635_120--Hb_001638_200 Hb_004635_120--Hb_012395_240 Hb_000156_110 Hb_000156_110 Hb_004635_120--Hb_000156_110 Hb_004635_120--Hb_000538_090 Hb_004635_120--Hb_032920_020 Hb_006816_380 Hb_006816_380 Hb_012395_240--Hb_006816_380 Hb_000928_030 Hb_000928_030 Hb_012395_240--Hb_000928_030 Hb_189208_070 Hb_189208_070 Hb_012395_240--Hb_189208_070 Hb_002043_020 Hb_002043_020 Hb_002078_330--Hb_002043_020 Hb_002704_060 Hb_002704_060 Hb_002078_330--Hb_002704_060 Hb_002078_330--Hb_008147_020 Hb_002078_330--Hb_143629_180 Hb_034235_010 Hb_034235_010 Hb_002078_330--Hb_034235_010 Hb_002609_120 Hb_002609_120 Hb_001638_200--Hb_002609_120 Hb_001439_080 Hb_001439_080 Hb_001638_200--Hb_001439_080 Hb_000009_270 Hb_000009_270 Hb_001638_200--Hb_000009_270 Hb_001638_200--Hb_032920_020 Hb_001638_200--Hb_000156_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0141342 0.510454 16.6269 13.1564 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0385067 0.746849 14.157

CAGE analysis