Hb_000922_200

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig922: 201689-203482
Sequence    

Annotation

kegg
ID pop:POPTR_0012s08280g
description POPTRDRAFT_570095; hypothetical protein
nr
ID XP_002318052.1
description hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
swissprot
ID Q9FM03
description Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6 PE=2 SV=2
trembl
ID B9I3A6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s08280g PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_200 0.0 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
2 Hb_000951_150 0.0704809146 - - hypothetical protein POPTR_0015s05850g [Populus trichocarpa]
3 Hb_051663_010 0.0790403575 - - receptor-kinase, putative [Ricinus communis]
4 Hb_000000_390 0.0793629232 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
5 Hb_004635_120 0.0841286756 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
6 Hb_001638_200 0.0879172104 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
7 Hb_012395_240 0.0884387377 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
8 Hb_000538_090 0.0905630315 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
9 Hb_032920_020 0.0908644218 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
10 Hb_001516_010 0.0910260922 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
11 Hb_000156_110 0.0954580882 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
12 Hb_001674_010 0.0978289178 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
13 Hb_001080_190 0.0996028099 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
14 Hb_009486_050 0.1008305085 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
15 Hb_001439_080 0.1029558271 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
16 Hb_005337_100 0.1041422342 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
17 Hb_007617_010 0.1042579773 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
18 Hb_002835_310 0.1049909275 - - ATP binding protein, putative [Ricinus communis]
19 Hb_001095_020 0.1061569721 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
20 Hb_002150_090 0.1061750571 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]

Gene co-expression network

sample Hb_000922_200 Hb_000922_200 Hb_000951_150 Hb_000951_150 Hb_000922_200--Hb_000951_150 Hb_051663_010 Hb_051663_010 Hb_000922_200--Hb_051663_010 Hb_000000_390 Hb_000000_390 Hb_000922_200--Hb_000000_390 Hb_004635_120 Hb_004635_120 Hb_000922_200--Hb_004635_120 Hb_001638_200 Hb_001638_200 Hb_000922_200--Hb_001638_200 Hb_012395_240 Hb_012395_240 Hb_000922_200--Hb_012395_240 Hb_019654_180 Hb_019654_180 Hb_000951_150--Hb_019654_180 Hb_000951_150--Hb_051663_010 Hb_000816_240 Hb_000816_240 Hb_000951_150--Hb_000816_240 Hb_000904_120 Hb_000904_120 Hb_000951_150--Hb_000904_120 Hb_149694_010 Hb_149694_010 Hb_000951_150--Hb_149694_010 Hb_001516_010 Hb_001516_010 Hb_051663_010--Hb_001516_010 Hb_051663_010--Hb_000000_390 Hb_111985_100 Hb_111985_100 Hb_051663_010--Hb_111985_100 Hb_032920_020 Hb_032920_020 Hb_051663_010--Hb_032920_020 Hb_009486_050 Hb_009486_050 Hb_051663_010--Hb_009486_050 Hb_000538_090 Hb_000538_090 Hb_000000_390--Hb_000538_090 Hb_000000_390--Hb_004635_120 Hb_000000_390--Hb_012395_240 Hb_002078_330 Hb_002078_330 Hb_000000_390--Hb_002078_330 Hb_000000_390--Hb_001638_200 Hb_004635_120--Hb_001638_200 Hb_004635_120--Hb_012395_240 Hb_000156_110 Hb_000156_110 Hb_004635_120--Hb_000156_110 Hb_004635_120--Hb_000538_090 Hb_004635_120--Hb_032920_020 Hb_002609_120 Hb_002609_120 Hb_001638_200--Hb_002609_120 Hb_001439_080 Hb_001439_080 Hb_001638_200--Hb_001439_080 Hb_000009_270 Hb_000009_270 Hb_001638_200--Hb_000009_270 Hb_001638_200--Hb_032920_020 Hb_001638_200--Hb_000156_110 Hb_012395_240--Hb_000538_090 Hb_006816_380 Hb_006816_380 Hb_012395_240--Hb_006816_380 Hb_000928_030 Hb_000928_030 Hb_012395_240--Hb_000928_030 Hb_189208_070 Hb_189208_070 Hb_012395_240--Hb_189208_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0397159 0.525847 12.2514 11.444 0.131568 0.0698836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.142889 0 0.688153 11.616

CAGE analysis