Hb_000904_120

Information

Type -
Description -
Location Contig904: 198441-202412
Sequence    

Annotation

kegg
ID rcu:RCOM_0813590
description hypothetical protein
nr
ID XP_002518768.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RYI4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0813590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61981: 198453-198710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000904_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000031_180 0.0718788436 - - sarcosine oxidase, putative [Ricinus communis]
3 Hb_012098_160 0.0756683262 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
4 Hb_007163_100 0.0807734802 - - BnaC03g52280D [Brassica napus]
5 Hb_015561_010 0.0809112767 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000329_780 0.0820710708 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
7 Hb_002119_100 0.0824407413 - - cytochrome B561, putative [Ricinus communis]
8 Hb_005694_160 0.0846492201 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000270_380 0.087789247 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
10 Hb_001486_280 0.0899377947 - - hypothetical protein RCOM_1321910 [Ricinus communis]
11 Hb_000599_150 0.0938561467 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
12 Hb_005532_030 0.0942574607 - - DNA binding protein, putative [Ricinus communis]
13 Hb_002374_180 0.0943741103 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
14 Hb_006831_090 0.0974982277 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
15 Hb_007483_090 0.0978885493 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005337_100 0.0983230312 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
17 Hb_000500_240 0.0985793068 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000336_290 0.0994662397 - - leucine-rich repeat protein, putative [Ricinus communis]
19 Hb_009023_010 0.1004750083 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
20 Hb_005762_010 0.100943261 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_000904_120 Hb_000904_120 Hb_000031_180 Hb_000031_180 Hb_000904_120--Hb_000031_180 Hb_012098_160 Hb_012098_160 Hb_000904_120--Hb_012098_160 Hb_007163_100 Hb_007163_100 Hb_000904_120--Hb_007163_100 Hb_015561_010 Hb_015561_010 Hb_000904_120--Hb_015561_010 Hb_000329_780 Hb_000329_780 Hb_000904_120--Hb_000329_780 Hb_002119_100 Hb_002119_100 Hb_000904_120--Hb_002119_100 Hb_000599_150 Hb_000599_150 Hb_000031_180--Hb_000599_150 Hb_000031_180--Hb_000329_780 Hb_004032_280 Hb_004032_280 Hb_000031_180--Hb_004032_280 Hb_027472_060 Hb_027472_060 Hb_000031_180--Hb_027472_060 Hb_000031_180--Hb_002119_100 Hb_006831_090 Hb_006831_090 Hb_000031_180--Hb_006831_090 Hb_000270_380 Hb_000270_380 Hb_012098_160--Hb_000270_380 Hb_012098_160--Hb_007163_100 Hb_009023_010 Hb_009023_010 Hb_012098_160--Hb_009023_010 Hb_001486_280 Hb_001486_280 Hb_012098_160--Hb_001486_280 Hb_012098_160--Hb_015561_010 Hb_002150_090 Hb_002150_090 Hb_007163_100--Hb_002150_090 Hb_008054_030 Hb_008054_030 Hb_007163_100--Hb_008054_030 Hb_000028_190 Hb_000028_190 Hb_007163_100--Hb_000028_190 Hb_003339_010 Hb_003339_010 Hb_007163_100--Hb_003339_010 Hb_001095_020 Hb_001095_020 Hb_007163_100--Hb_001095_020 Hb_002062_010 Hb_002062_010 Hb_015561_010--Hb_002062_010 Hb_001512_130 Hb_001512_130 Hb_015561_010--Hb_001512_130 Hb_015561_010--Hb_002119_100 Hb_015561_010--Hb_009023_010 Hb_003417_050 Hb_003417_050 Hb_015561_010--Hb_003417_050 Hb_007483_090 Hb_007483_090 Hb_015561_010--Hb_007483_090 Hb_000329_780--Hb_006831_090 Hb_002600_170 Hb_002600_170 Hb_000329_780--Hb_002600_170 Hb_000329_780--Hb_002119_100 Hb_002374_180 Hb_002374_180 Hb_000329_780--Hb_002374_180 Hb_008536_020 Hb_008536_020 Hb_000329_780--Hb_008536_020 Hb_002119_100--Hb_007483_090 Hb_002119_100--Hb_002062_010 Hb_002119_100--Hb_003417_050 Hb_002740_050 Hb_002740_050 Hb_002119_100--Hb_002740_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.20182 1.39666 9.58448 13.7852 0.107727 0.275885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.297456 13.7298

CAGE analysis