Hb_003339_010

Information

Type -
Description -
Location Contig3339: 36949-38103
Sequence    

Annotation

kegg
ID rcu:RCOM_1590900
description hypothetical protein
nr
ID KDP38351.1
description hypothetical protein JCGZ_04276 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQ65
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04276 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35019: 37118-37602
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003339_010 0.0 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
2 Hb_008054_030 0.0188899738 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
3 Hb_005762_010 0.0542241431 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
4 Hb_000028_190 0.0646258282 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
5 Hb_007163_100 0.0690874822 - - BnaC03g52280D [Brassica napus]
6 Hb_002150_090 0.0741410578 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
7 Hb_004137_040 0.0747193799 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
8 Hb_001766_130 0.0767504119 - - zinc finger protein, putative [Ricinus communis]
9 Hb_008221_200 0.078129781 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
10 Hb_002066_110 0.0795702763 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
11 Hb_000230_300 0.0801743259 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
12 Hb_001674_010 0.0857893869 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
13 Hb_001117_050 0.0865082116 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
14 Hb_000718_060 0.0874528554 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
15 Hb_012098_160 0.0899078536 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
16 Hb_011853_020 0.091945897 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
17 Hb_007483_090 0.0919830116 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001545_020 0.0932508215 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X5 [Populus euphratica]
19 Hb_015561_010 0.0936155374 - - conserved hypothetical protein [Ricinus communis]
20 Hb_032920_020 0.0944707735 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003339_010 Hb_003339_010 Hb_008054_030 Hb_008054_030 Hb_003339_010--Hb_008054_030 Hb_005762_010 Hb_005762_010 Hb_003339_010--Hb_005762_010 Hb_000028_190 Hb_000028_190 Hb_003339_010--Hb_000028_190 Hb_007163_100 Hb_007163_100 Hb_003339_010--Hb_007163_100 Hb_002150_090 Hb_002150_090 Hb_003339_010--Hb_002150_090 Hb_004137_040 Hb_004137_040 Hb_003339_010--Hb_004137_040 Hb_008054_030--Hb_000028_190 Hb_008054_030--Hb_007163_100 Hb_008054_030--Hb_005762_010 Hb_008054_030--Hb_002150_090 Hb_008221_200 Hb_008221_200 Hb_008054_030--Hb_008221_200 Hb_000230_300 Hb_000230_300 Hb_005762_010--Hb_000230_300 Hb_000103_200 Hb_000103_200 Hb_005762_010--Hb_000103_200 Hb_009023_010 Hb_009023_010 Hb_005762_010--Hb_009023_010 Hb_005762_010--Hb_004137_040 Hb_000028_190--Hb_004137_040 Hb_000028_190--Hb_002150_090 Hb_000483_450 Hb_000483_450 Hb_000028_190--Hb_000483_450 Hb_001674_010 Hb_001674_010 Hb_000028_190--Hb_001674_010 Hb_000928_030 Hb_000928_030 Hb_000028_190--Hb_000928_030 Hb_007163_100--Hb_002150_090 Hb_012098_160 Hb_012098_160 Hb_007163_100--Hb_012098_160 Hb_007163_100--Hb_000028_190 Hb_001095_020 Hb_001095_020 Hb_007163_100--Hb_001095_020 Hb_002150_090--Hb_001095_020 Hb_002066_110 Hb_002066_110 Hb_002150_090--Hb_002066_110 Hb_002150_090--Hb_001674_010 Hb_004137_040--Hb_000483_450 Hb_002221_060 Hb_002221_060 Hb_004137_040--Hb_002221_060 Hb_004137_040--Hb_000928_030 Hb_004137_040--Hb_000230_300 Hb_004137_040--Hb_000103_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.615503 3.00461 4.54739 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0937587 3.31179

CAGE analysis