Hb_000230_300

Information

Type -
Description -
Location Contig230: 292302-293324
Sequence    

Annotation

kegg
ID rcu:RCOM_0678720
description s-adenosylmethionine decarboxylase, putative (EC:4.1.1.50)
nr
ID XP_012069469.1
description PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
swissprot
ID Q3E9D5
description S-adenosylmethionine decarboxylase proenzyme 4 OS=Arabidopsis thaliana GN=SAMDC4 PE=1 SV=1
trembl
ID A0A067KV87
description S-adenosylmethionine decarboxylase proenzyme OS=Jatropha curcas GN=JCGZ_02065 PE=3 SV=1
Gene Ontology
ID GO:0004014
description s-adenosylmethionine decarboxylase proenzyme 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24027: 292192-292733
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_300 0.0 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
2 Hb_002221_060 0.0446201431 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
3 Hb_000003_380 0.0564576824 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004137_040 0.0632070543 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
5 Hb_005762_010 0.063385269 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
6 Hb_000103_200 0.065765513 - - calmodulin binding protein, putative [Ricinus communis]
7 Hb_000028_190 0.0794993827 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
8 Hb_000928_030 0.0798954997 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
9 Hb_003339_010 0.0801743259 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
10 Hb_000684_070 0.0862980586 - - PREDICTED: uncharacterized protein LOC105642198 isoform X1 [Jatropha curcas]
11 Hb_008054_030 0.0878416736 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
12 Hb_000483_450 0.0883935857 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
13 Hb_001766_130 0.0886765787 - - zinc finger protein, putative [Ricinus communis]
14 Hb_096027_010 0.0910931229 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_003723_050 0.0922149026 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010883_170 0.0923513364 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
17 Hb_011853_020 0.0930649822 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
18 Hb_001545_020 0.0934025749 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X5 [Populus euphratica]
19 Hb_011618_110 0.0984886766 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
20 Hb_052530_020 0.0985197501 - - cytochrome B5 isoform 1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000230_300 Hb_000230_300 Hb_002221_060 Hb_002221_060 Hb_000230_300--Hb_002221_060 Hb_000003_380 Hb_000003_380 Hb_000230_300--Hb_000003_380 Hb_004137_040 Hb_004137_040 Hb_000230_300--Hb_004137_040 Hb_005762_010 Hb_005762_010 Hb_000230_300--Hb_005762_010 Hb_000103_200 Hb_000103_200 Hb_000230_300--Hb_000103_200 Hb_000028_190 Hb_000028_190 Hb_000230_300--Hb_000028_190 Hb_002221_060--Hb_000003_380 Hb_002221_060--Hb_004137_040 Hb_000483_450 Hb_000483_450 Hb_002221_060--Hb_000483_450 Hb_002221_060--Hb_000103_200 Hb_000928_030 Hb_000928_030 Hb_002221_060--Hb_000928_030 Hb_000003_380--Hb_004137_040 Hb_000003_380--Hb_000483_450 Hb_003376_020 Hb_003376_020 Hb_000003_380--Hb_003376_020 Hb_000003_380--Hb_000928_030 Hb_004137_040--Hb_000028_190 Hb_004137_040--Hb_000483_450 Hb_004137_040--Hb_000928_030 Hb_004137_040--Hb_000103_200 Hb_003339_010 Hb_003339_010 Hb_005762_010--Hb_003339_010 Hb_008054_030 Hb_008054_030 Hb_005762_010--Hb_008054_030 Hb_005762_010--Hb_000103_200 Hb_009023_010 Hb_009023_010 Hb_005762_010--Hb_009023_010 Hb_005762_010--Hb_004137_040 Hb_000103_200--Hb_000928_030 Hb_000103_200--Hb_000028_190 Hb_002150_090 Hb_002150_090 Hb_000028_190--Hb_002150_090 Hb_000028_190--Hb_000483_450 Hb_001674_010 Hb_001674_010 Hb_000028_190--Hb_001674_010 Hb_000028_190--Hb_008054_030 Hb_000028_190--Hb_000928_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.269203 2.2212 3.53118 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.30247

CAGE analysis