Hb_002150_090

Information

Type -
Description -
Location Contig2150: 82044-84663
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13590g
description POPTRDRAFT_554451; leucine-rich repeat transmembrane protein kinase
nr
ID XP_012086772.1
description PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
swissprot
ID Q9SUQ3
description Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=2 SV=1
trembl
ID A0A067K0L5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20495 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable inactive receptor kinase at4g23740

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22234: 82102-82806 , PASA_asmbl_22235: 83314-85253 , PASA_asmbl_22236: 84634-84886
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002150_090 0.0 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
2 Hb_000028_190 0.0536723714 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
3 Hb_001095_020 0.0584332191 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
4 Hb_007163_100 0.0622286132 - - BnaC03g52280D [Brassica napus]
5 Hb_008054_030 0.0665986579 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
6 Hb_002066_110 0.0670055433 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
7 Hb_001674_010 0.0681912996 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
8 Hb_052530_020 0.0686690794 - - cytochrome B5 isoform 1, putative [Ricinus communis]
9 Hb_002572_040 0.0710464376 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
10 Hb_032920_020 0.0713051325 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
11 Hb_004137_040 0.0723290706 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
12 Hb_003339_010 0.0741410578 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
13 Hb_000599_150 0.0813598214 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
14 Hb_000392_110 0.0844348829 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
15 Hb_001541_130 0.0850394536 - - GDSL esterase/lipase [Morus notabilis]
16 Hb_003417_050 0.0852149706 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_006242_050 0.0856426157 - - Osmotin precursor, putative [Ricinus communis]
18 Hb_000483_450 0.0875859494 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
19 Hb_000928_030 0.088975284 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
20 Hb_111985_100 0.0923675438 - - beta-galactosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002150_090 Hb_002150_090 Hb_000028_190 Hb_000028_190 Hb_002150_090--Hb_000028_190 Hb_001095_020 Hb_001095_020 Hb_002150_090--Hb_001095_020 Hb_007163_100 Hb_007163_100 Hb_002150_090--Hb_007163_100 Hb_008054_030 Hb_008054_030 Hb_002150_090--Hb_008054_030 Hb_002066_110 Hb_002066_110 Hb_002150_090--Hb_002066_110 Hb_001674_010 Hb_001674_010 Hb_002150_090--Hb_001674_010 Hb_004137_040 Hb_004137_040 Hb_000028_190--Hb_004137_040 Hb_000483_450 Hb_000483_450 Hb_000028_190--Hb_000483_450 Hb_000028_190--Hb_001674_010 Hb_000028_190--Hb_008054_030 Hb_000928_030 Hb_000928_030 Hb_000028_190--Hb_000928_030 Hb_001095_020--Hb_001674_010 Hb_001095_020--Hb_000028_190 Hb_004435_020 Hb_004435_020 Hb_001095_020--Hb_004435_020 Hb_001095_020--Hb_007163_100 Hb_001541_130 Hb_001541_130 Hb_001095_020--Hb_001541_130 Hb_007163_100--Hb_008054_030 Hb_012098_160 Hb_012098_160 Hb_007163_100--Hb_012098_160 Hb_007163_100--Hb_000028_190 Hb_003339_010 Hb_003339_010 Hb_007163_100--Hb_003339_010 Hb_008054_030--Hb_003339_010 Hb_005762_010 Hb_005762_010 Hb_008054_030--Hb_005762_010 Hb_008221_200 Hb_008221_200 Hb_008054_030--Hb_008221_200 Hb_002066_110--Hb_001674_010 Hb_002066_110--Hb_001095_020 Hb_002066_110--Hb_008054_030 Hb_002066_110--Hb_003339_010 Hb_000617_360 Hb_000617_360 Hb_002066_110--Hb_000617_360 Hb_032920_020 Hb_032920_020 Hb_001674_010--Hb_032920_020 Hb_000009_270 Hb_000009_270 Hb_001674_010--Hb_000009_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0092806 0.862697 7.51711 10.9963 0 0.00811899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0210832 0.0497678 0 0.534293 8.3938

CAGE analysis