Hb_005762_010

Information

Type -
Description -
Location Contig5762: 35272-36957
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07770g
description POPTRDRAFT_1087631; hypothetical protein
nr
ID XP_011024930.1
description PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
swissprot
ID Q9LI74
description Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1
trembl
ID U5GWX8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28570g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49675: 35231-36183
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005762_010 0.0 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
2 Hb_003339_010 0.0542241431 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
3 Hb_000230_300 0.063385269 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
4 Hb_008054_030 0.0652682097 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
5 Hb_000103_200 0.0701015742 - - calmodulin binding protein, putative [Ricinus communis]
6 Hb_009023_010 0.0725862234 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
7 Hb_004137_040 0.0746513897 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
8 Hb_001766_130 0.0760361604 - - zinc finger protein, putative [Ricinus communis]
9 Hb_001545_020 0.0768962153 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X5 [Populus euphratica]
10 Hb_000028_190 0.076999354 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
11 Hb_015561_010 0.0830484477 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002119_100 0.084811995 - - cytochrome B561, putative [Ricinus communis]
13 Hb_012098_160 0.0873277389 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
14 Hb_002221_060 0.0877471516 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
15 Hb_007163_100 0.0905981986 - - BnaC03g52280D [Brassica napus]
16 Hb_011853_020 0.0908571235 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
17 Hb_007483_090 0.0910877032 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000617_360 0.0927651273 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000270_380 0.0936830884 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
20 Hb_000684_070 0.0947737918 - - PREDICTED: uncharacterized protein LOC105642198 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005762_010 Hb_005762_010 Hb_003339_010 Hb_003339_010 Hb_005762_010--Hb_003339_010 Hb_000230_300 Hb_000230_300 Hb_005762_010--Hb_000230_300 Hb_008054_030 Hb_008054_030 Hb_005762_010--Hb_008054_030 Hb_000103_200 Hb_000103_200 Hb_005762_010--Hb_000103_200 Hb_009023_010 Hb_009023_010 Hb_005762_010--Hb_009023_010 Hb_004137_040 Hb_004137_040 Hb_005762_010--Hb_004137_040 Hb_003339_010--Hb_008054_030 Hb_000028_190 Hb_000028_190 Hb_003339_010--Hb_000028_190 Hb_007163_100 Hb_007163_100 Hb_003339_010--Hb_007163_100 Hb_002150_090 Hb_002150_090 Hb_003339_010--Hb_002150_090 Hb_003339_010--Hb_004137_040 Hb_002221_060 Hb_002221_060 Hb_000230_300--Hb_002221_060 Hb_000003_380 Hb_000003_380 Hb_000230_300--Hb_000003_380 Hb_000230_300--Hb_004137_040 Hb_000230_300--Hb_000103_200 Hb_000230_300--Hb_000028_190 Hb_008054_030--Hb_000028_190 Hb_008054_030--Hb_007163_100 Hb_008054_030--Hb_002150_090 Hb_008221_200 Hb_008221_200 Hb_008054_030--Hb_008221_200 Hb_000103_200--Hb_004137_040 Hb_000103_200--Hb_002221_060 Hb_000928_030 Hb_000928_030 Hb_000103_200--Hb_000928_030 Hb_000103_200--Hb_000028_190 Hb_000270_380 Hb_000270_380 Hb_009023_010--Hb_000270_380 Hb_015561_010 Hb_015561_010 Hb_009023_010--Hb_015561_010 Hb_002062_010 Hb_002062_010 Hb_009023_010--Hb_002062_010 Hb_012098_160 Hb_012098_160 Hb_009023_010--Hb_012098_160 Hb_001512_130 Hb_001512_130 Hb_009023_010--Hb_001512_130 Hb_004137_040--Hb_000028_190 Hb_000483_450 Hb_000483_450 Hb_004137_040--Hb_000483_450 Hb_004137_040--Hb_002221_060 Hb_004137_040--Hb_000928_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.19525 6.34809 10.5957 0.0573159 0.0131939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0646641 7.47727

CAGE analysis