Hb_000028_190

Information

Type -
Description -
Location Contig28: 189520-192735
Sequence    

Annotation

kegg
ID rcu:RCOM_0054530
description ATP binding protein, putative (EC:2.7.11.26)
nr
ID XP_012088046.1
description PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
swissprot
ID Q9LP77
description Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=2 SV=1
trembl
ID A0A067JWK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26596 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable inactive receptor kinase at1g48480

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29191: 189521-192759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_190 0.0 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
2 Hb_004137_040 0.0469854656 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
3 Hb_002150_090 0.0536723714 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
4 Hb_000483_450 0.0542545312 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
5 Hb_001674_010 0.056744331 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
6 Hb_008054_030 0.0593961423 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
7 Hb_000928_030 0.0612894758 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
8 Hb_001095_020 0.0626279479 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
9 Hb_032920_020 0.0638082908 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
10 Hb_003339_010 0.0646258282 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
11 Hb_007163_100 0.0677882623 - - BnaC03g52280D [Brassica napus]
12 Hb_000103_200 0.0737161098 - - calmodulin binding protein, putative [Ricinus communis]
13 Hb_001545_020 0.0766806595 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X5 [Populus euphratica]
14 Hb_005762_010 0.076999354 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
15 Hb_002221_060 0.0771126144 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
16 Hb_052530_020 0.0778900493 - - cytochrome B5 isoform 1, putative [Ricinus communis]
17 Hb_000230_300 0.0794993827 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
18 Hb_000392_110 0.0815062242 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
19 Hb_000009_270 0.0830794484 - - Calmodulin, putative [Ricinus communis]
20 Hb_002066_110 0.0833635853 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_190 Hb_000028_190 Hb_004137_040 Hb_004137_040 Hb_000028_190--Hb_004137_040 Hb_002150_090 Hb_002150_090 Hb_000028_190--Hb_002150_090 Hb_000483_450 Hb_000483_450 Hb_000028_190--Hb_000483_450 Hb_001674_010 Hb_001674_010 Hb_000028_190--Hb_001674_010 Hb_008054_030 Hb_008054_030 Hb_000028_190--Hb_008054_030 Hb_000928_030 Hb_000928_030 Hb_000028_190--Hb_000928_030 Hb_004137_040--Hb_000483_450 Hb_002221_060 Hb_002221_060 Hb_004137_040--Hb_002221_060 Hb_004137_040--Hb_000928_030 Hb_000230_300 Hb_000230_300 Hb_004137_040--Hb_000230_300 Hb_000103_200 Hb_000103_200 Hb_004137_040--Hb_000103_200 Hb_001095_020 Hb_001095_020 Hb_002150_090--Hb_001095_020 Hb_007163_100 Hb_007163_100 Hb_002150_090--Hb_007163_100 Hb_002150_090--Hb_008054_030 Hb_002066_110 Hb_002066_110 Hb_002150_090--Hb_002066_110 Hb_002150_090--Hb_001674_010 Hb_004202_020 Hb_004202_020 Hb_000483_450--Hb_004202_020 Hb_000483_450--Hb_002221_060 Hb_003894_110 Hb_003894_110 Hb_000483_450--Hb_003894_110 Hb_000392_110 Hb_000392_110 Hb_000483_450--Hb_000392_110 Hb_032920_020 Hb_032920_020 Hb_001674_010--Hb_032920_020 Hb_001674_010--Hb_001095_020 Hb_000009_270 Hb_000009_270 Hb_001674_010--Hb_000009_270 Hb_001674_010--Hb_002066_110 Hb_003339_010 Hb_003339_010 Hb_008054_030--Hb_003339_010 Hb_008054_030--Hb_007163_100 Hb_005762_010 Hb_005762_010 Hb_008054_030--Hb_005762_010 Hb_008221_200 Hb_008221_200 Hb_008054_030--Hb_008221_200 Hb_052530_020 Hb_052530_020 Hb_000928_030--Hb_052530_020 Hb_000928_030--Hb_002221_060 Hb_000928_030--Hb_000103_200 Hb_000358_260 Hb_000358_260 Hb_000928_030--Hb_000358_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.11159 5.12452 53.6399 76.0707 0.039358 0.0216736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0267665 1.97984 53.0631

CAGE analysis