Hb_003894_110

Information

Type -
Description -
Location Contig3894: 77150-81608
Sequence    

Annotation

kegg
ID rcu:RCOM_1612250
description PLE, putative
nr
ID XP_012083564.1
description PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
swissprot
ID Q9LZY0
description 65-kDa microtubule-associated protein 4 OS=Arabidopsis thaliana GN=MAP65-4 PE=1 SV=2
trembl
ID A0A067JY14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14518 PE=4 SV=1
Gene Ontology
ID GO:0008017
description 65-kda microtubule-associated protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39030: 76754-77924 , PASA_asmbl_39031: 77925-79552 , PASA_asmbl_39033: 80144-80370 , PASA_asmbl_39034: 80617-81639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003894_110 0.0 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
2 Hb_040852_010 0.0394178712 - - conserved hypothetical protein [Ricinus communis]
3 Hb_152910_050 0.0441810477 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
4 Hb_098315_060 0.0489647093 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
5 Hb_000134_130 0.0499196416 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
6 Hb_003376_020 0.0593759983 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_004202_020 0.0613776997 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000483_450 0.0690766039 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
9 Hb_001021_120 0.070569118 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
10 Hb_001007_020 0.077467529 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
11 Hb_000392_110 0.0774996251 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
12 Hb_000009_270 0.0777609472 - - Calmodulin, putative [Ricinus communis]
13 Hb_000320_010 0.0841118449 - - conserved hypothetical protein [Ricinus communis]
14 Hb_039222_010 0.0855082702 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
15 Hb_017434_010 0.0859389314 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
16 Hb_000418_110 0.0877127002 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
17 Hb_000103_220 0.0880859273 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
18 Hb_001047_090 0.0912727066 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
19 Hb_007218_040 0.091679216 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
20 Hb_000003_380 0.0981362089 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003894_110 Hb_003894_110 Hb_040852_010 Hb_040852_010 Hb_003894_110--Hb_040852_010 Hb_152910_050 Hb_152910_050 Hb_003894_110--Hb_152910_050 Hb_098315_060 Hb_098315_060 Hb_003894_110--Hb_098315_060 Hb_000134_130 Hb_000134_130 Hb_003894_110--Hb_000134_130 Hb_003376_020 Hb_003376_020 Hb_003894_110--Hb_003376_020 Hb_004202_020 Hb_004202_020 Hb_003894_110--Hb_004202_020 Hb_040852_010--Hb_152910_050 Hb_040852_010--Hb_098315_060 Hb_040852_010--Hb_000134_130 Hb_040852_010--Hb_003376_020 Hb_040852_010--Hb_004202_020 Hb_152910_050--Hb_098315_060 Hb_152910_050--Hb_000134_130 Hb_017434_010 Hb_017434_010 Hb_152910_050--Hb_017434_010 Hb_000103_220 Hb_000103_220 Hb_152910_050--Hb_000103_220 Hb_098315_060--Hb_000134_130 Hb_098315_060--Hb_017434_010 Hb_098315_060--Hb_000103_220 Hb_001021_120 Hb_001021_120 Hb_000134_130--Hb_001021_120 Hb_000134_130--Hb_003376_020 Hb_003376_020--Hb_152910_050 Hb_003376_020--Hb_098315_060 Hb_003376_020--Hb_000103_220 Hb_000483_450 Hb_000483_450 Hb_004202_020--Hb_000483_450 Hb_001047_090 Hb_001047_090 Hb_004202_020--Hb_001047_090 Hb_000392_110 Hb_000392_110 Hb_004202_020--Hb_000392_110 Hb_004202_020--Hb_003376_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.312482 5.12598 6.52189 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0161868 0 0.154438 2.70884

CAGE analysis