Hb_017434_010

Information

Type -
Description -
Location Contig17434: 1616-5051
Sequence    

Annotation

kegg
ID rcu:RCOM_0052400
description receptor protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012086448.1
description PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
swissprot
ID P43298
description Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1
trembl
ID A0A067K0Q2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22547 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable receptor protein kinase tmk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16614: 1616-5085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017434_010 0.0 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
2 Hb_000103_220 0.0432029433 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
3 Hb_098315_060 0.055180622 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
4 Hb_152910_050 0.0570846175 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
5 Hb_000009_270 0.0592154605 - - Calmodulin, putative [Ricinus communis]
6 Hb_010449_010 0.0651163141 - - l-ascorbate oxidase, putative [Ricinus communis]
7 Hb_001021_120 0.0691598621 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
8 Hb_001638_200 0.0725159571 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
9 Hb_001674_010 0.0756543338 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
10 Hb_003376_020 0.0779794645 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_040852_010 0.0780470818 - - conserved hypothetical protein [Ricinus communis]
12 Hb_031321_020 0.078131959 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
13 Hb_000134_130 0.0782478744 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
14 Hb_001080_190 0.0782694232 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
15 Hb_017383_010 0.0782825651 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
16 Hb_002609_120 0.0802047519 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
17 Hb_004137_040 0.083540628 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
18 Hb_032920_020 0.0856787913 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
19 Hb_003894_110 0.0859389314 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
20 Hb_000028_190 0.0879678628 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]

Gene co-expression network

sample Hb_017434_010 Hb_017434_010 Hb_000103_220 Hb_000103_220 Hb_017434_010--Hb_000103_220 Hb_098315_060 Hb_098315_060 Hb_017434_010--Hb_098315_060 Hb_152910_050 Hb_152910_050 Hb_017434_010--Hb_152910_050 Hb_000009_270 Hb_000009_270 Hb_017434_010--Hb_000009_270 Hb_010449_010 Hb_010449_010 Hb_017434_010--Hb_010449_010 Hb_001021_120 Hb_001021_120 Hb_017434_010--Hb_001021_120 Hb_000103_220--Hb_152910_050 Hb_000103_220--Hb_098315_060 Hb_017383_010 Hb_017383_010 Hb_000103_220--Hb_017383_010 Hb_003376_020 Hb_003376_020 Hb_000103_220--Hb_003376_020 Hb_040852_010 Hb_040852_010 Hb_000103_220--Hb_040852_010 Hb_098315_060--Hb_152910_050 Hb_098315_060--Hb_040852_010 Hb_000134_130 Hb_000134_130 Hb_098315_060--Hb_000134_130 Hb_003894_110 Hb_003894_110 Hb_098315_060--Hb_003894_110 Hb_152910_050--Hb_040852_010 Hb_152910_050--Hb_003894_110 Hb_152910_050--Hb_000134_130 Hb_002609_120 Hb_002609_120 Hb_000009_270--Hb_002609_120 Hb_000009_270--Hb_001021_120 Hb_032920_020 Hb_032920_020 Hb_000009_270--Hb_032920_020 Hb_000009_270--Hb_098315_060 Hb_001674_010 Hb_001674_010 Hb_000009_270--Hb_001674_010 Hb_010449_010--Hb_017383_010 Hb_000032_420 Hb_000032_420 Hb_010449_010--Hb_000032_420 Hb_010449_010--Hb_000103_220 Hb_000996_070 Hb_000996_070 Hb_010449_010--Hb_000996_070 Hb_010449_010--Hb_098315_060 Hb_031321_020 Hb_031321_020 Hb_001021_120--Hb_031321_020 Hb_001021_120--Hb_000134_130 Hb_007922_030 Hb_007922_030 Hb_001021_120--Hb_007922_030 Hb_001021_120--Hb_152910_050 Hb_001021_120--Hb_098315_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0450953 3.10826 29.9524 30.4757 0.056129 0.022418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0141285 0.0111181 0 0.449729 18.5824

CAGE analysis