Hb_017383_010

Information

Type -
Description -
Location Contig17383: 754-1519
Sequence    

Annotation

kegg
ID tcc:TCM_041964
description Embryo-specific protein 3, putative
nr
ID XP_012064933.1
description PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L6V5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05619 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16534: 822-1446
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017383_010 0.0 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
2 Hb_010449_010 0.0509491253 - - l-ascorbate oxidase, putative [Ricinus communis]
3 Hb_000032_420 0.0559078478 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
4 Hb_000103_220 0.0667880624 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
5 Hb_000077_280 0.0679719496 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_017434_010 0.0782825651 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
7 Hb_001794_040 0.0792578869 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
8 Hb_000441_130 0.0824539144 - - PREDICTED: homeobox-leucine zipper protein HOX32 [Vitis vinifera]
9 Hb_000680_170 0.0879244414 - - hypothetical protein JCGZ_24789 [Jatropha curcas]
10 Hb_000996_070 0.0915411423 - - unnamed protein product [Vitis vinifera]
11 Hb_020738_010 0.0916474125 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
12 Hb_098315_060 0.0926165053 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
13 Hb_001674_010 0.0957583185 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
14 Hb_004223_060 0.0958802116 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
15 Hb_015048_020 0.0982409831 - - PREDICTED: myb-like protein D [Jatropha curcas]
16 Hb_008895_020 0.0991401678 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
17 Hb_001544_090 0.0995942695 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
18 Hb_152910_050 0.0999382759 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
19 Hb_001117_050 0.100158235 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
20 Hb_004137_110 0.1003313694 - - PREDICTED: probable auxin efflux carrier component 6 [Jatropha curcas]

Gene co-expression network

sample Hb_017383_010 Hb_017383_010 Hb_010449_010 Hb_010449_010 Hb_017383_010--Hb_010449_010 Hb_000032_420 Hb_000032_420 Hb_017383_010--Hb_000032_420 Hb_000103_220 Hb_000103_220 Hb_017383_010--Hb_000103_220 Hb_000077_280 Hb_000077_280 Hb_017383_010--Hb_000077_280 Hb_017434_010 Hb_017434_010 Hb_017383_010--Hb_017434_010 Hb_001794_040 Hb_001794_040 Hb_017383_010--Hb_001794_040 Hb_010449_010--Hb_000032_420 Hb_010449_010--Hb_017434_010 Hb_010449_010--Hb_000103_220 Hb_000996_070 Hb_000996_070 Hb_010449_010--Hb_000996_070 Hb_098315_060 Hb_098315_060 Hb_010449_010--Hb_098315_060 Hb_001544_090 Hb_001544_090 Hb_000032_420--Hb_001544_090 Hb_000032_420--Hb_000996_070 Hb_015048_020 Hb_015048_020 Hb_000032_420--Hb_015048_020 Hb_000441_130 Hb_000441_130 Hb_000032_420--Hb_000441_130 Hb_000103_220--Hb_017434_010 Hb_152910_050 Hb_152910_050 Hb_000103_220--Hb_152910_050 Hb_000103_220--Hb_098315_060 Hb_003376_020 Hb_003376_020 Hb_000103_220--Hb_003376_020 Hb_040852_010 Hb_040852_010 Hb_000103_220--Hb_040852_010 Hb_004223_060 Hb_004223_060 Hb_000077_280--Hb_004223_060 Hb_020738_010 Hb_020738_010 Hb_000077_280--Hb_020738_010 Hb_000077_280--Hb_000032_420 Hb_007904_280 Hb_007904_280 Hb_000077_280--Hb_007904_280 Hb_000077_280--Hb_000103_220 Hb_017434_010--Hb_098315_060 Hb_017434_010--Hb_152910_050 Hb_000009_270 Hb_000009_270 Hb_017434_010--Hb_000009_270 Hb_001021_120 Hb_001021_120 Hb_017434_010--Hb_001021_120 Hb_001117_050 Hb_001117_050 Hb_001794_040--Hb_001117_050 Hb_000012_350 Hb_000012_350 Hb_001794_040--Hb_000012_350 Hb_001794_040--Hb_020738_010 Hb_001794_040--Hb_000032_420 Hb_001794_040--Hb_010449_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0800273 1.8275 9.13386 10.6539 0.0778212 0.0564212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.238261 5.5483

CAGE analysis