Hb_000012_350

Information

Type transcription factor
Description TF Family: HB
Location Contig12: 439696-442103
Sequence    

Annotation

kegg
ID rcu:RCOM_0797780
description bel1 homeotic protein, putative
nr
ID XP_012077303.1
description PREDICTED: homeobox protein ATH1 [Jatropha curcas]
swissprot
ID P48731
description Homeobox protein ATH1 OS=Arabidopsis thaliana GN=ATH1 PE=1 SV=1
trembl
ID A0A067KP98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07681 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein ath1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06026: 441795-443045
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_350 0.0 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
2 Hb_001794_040 0.0691038033 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
3 Hb_011574_020 0.0752262981 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
4 Hb_010164_030 0.0791654308 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
5 Hb_020738_010 0.0807887812 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
6 Hb_001427_100 0.0809373516 - - acc synthase, putative [Ricinus communis]
7 Hb_000827_020 0.0813757033 - - unnamed protein product [Coffea canephora]
8 Hb_007904_280 0.0828052732 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
9 Hb_001117_050 0.0851270372 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
10 Hb_003054_070 0.0880521776 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
11 Hb_001408_080 0.0901794017 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
12 Hb_001638_340 0.0904955742 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009785_030 0.09161877 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
14 Hb_000617_330 0.0931883437 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
15 Hb_009783_010 0.0934998108 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
16 Hb_012132_050 0.0943822013 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
17 Hb_039946_060 0.0967164888 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
18 Hb_011853_020 0.099021335 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
19 Hb_000077_280 0.0999811467 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_059275_010 0.1019071465 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000012_350 Hb_000012_350 Hb_001794_040 Hb_001794_040 Hb_000012_350--Hb_001794_040 Hb_011574_020 Hb_011574_020 Hb_000012_350--Hb_011574_020 Hb_010164_030 Hb_010164_030 Hb_000012_350--Hb_010164_030 Hb_020738_010 Hb_020738_010 Hb_000012_350--Hb_020738_010 Hb_001427_100 Hb_001427_100 Hb_000012_350--Hb_001427_100 Hb_000827_020 Hb_000827_020 Hb_000012_350--Hb_000827_020 Hb_001117_050 Hb_001117_050 Hb_001794_040--Hb_001117_050 Hb_001794_040--Hb_020738_010 Hb_017383_010 Hb_017383_010 Hb_001794_040--Hb_017383_010 Hb_000032_420 Hb_000032_420 Hb_001794_040--Hb_000032_420 Hb_010449_010 Hb_010449_010 Hb_001794_040--Hb_010449_010 Hb_011574_020--Hb_020738_010 Hb_001638_340 Hb_001638_340 Hb_011574_020--Hb_001638_340 Hb_059275_010 Hb_059275_010 Hb_011574_020--Hb_059275_010 Hb_008895_020 Hb_008895_020 Hb_011574_020--Hb_008895_020 Hb_011574_020--Hb_001794_040 Hb_147006_010 Hb_147006_010 Hb_010164_030--Hb_147006_010 Hb_003054_070 Hb_003054_070 Hb_010164_030--Hb_003054_070 Hb_010164_030--Hb_001427_100 Hb_010164_030--Hb_001117_050 Hb_036520_030 Hb_036520_030 Hb_010164_030--Hb_036520_030 Hb_020738_010--Hb_059275_010 Hb_050898_030 Hb_050898_030 Hb_020738_010--Hb_050898_030 Hb_000077_280 Hb_000077_280 Hb_020738_010--Hb_000077_280 Hb_039946_060 Hb_039946_060 Hb_001427_100--Hb_039946_060 Hb_001408_080 Hb_001408_080 Hb_001427_100--Hb_001408_080 Hb_005111_020 Hb_005111_020 Hb_001427_100--Hb_005111_020 Hb_000020_210 Hb_000020_210 Hb_001427_100--Hb_000020_210 Hb_003399_110 Hb_003399_110 Hb_000827_020--Hb_003399_110 Hb_000964_040 Hb_000964_040 Hb_000827_020--Hb_000964_040 Hb_000827_020--Hb_001408_080 Hb_012132_050 Hb_012132_050 Hb_000827_020--Hb_012132_050 Hb_009785_030 Hb_009785_030 Hb_000827_020--Hb_009785_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0112022 0.524462 1.26019 2.48396 0.0217085 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0718607 1.05556

CAGE analysis