Hb_012132_050

Information

Type -
Description -
Location Contig12132: 50572-51888
Sequence    

Annotation

kegg
ID pop:POPTR_0004s08340g
description POPTRDRAFT_555992; aspartyl protease family protein
nr
ID XP_012086431.1
description PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
swissprot
ID Q9LZL3
description Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1
trembl
ID B9H3C4
description Aspartyl protease family protein OS=Populus trichocarpa GN=POPTR_0004s08340g PE=3 SV=2
Gene Ontology
ID GO:0004190
description aspartic proteinase pcs1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012132_050 0.0 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
2 Hb_007904_280 0.0624205489 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
3 Hb_009783_010 0.066873017 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
4 Hb_001898_040 0.0748580152 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
5 Hb_001136_160 0.0770914229 - - catalytic, putative [Ricinus communis]
6 Hb_001408_080 0.0799100817 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
7 Hb_003466_010 0.0848873441 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
8 Hb_000964_040 0.0851862239 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]
9 Hb_004607_060 0.0877160264 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
10 Hb_000395_310 0.0895994231 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
11 Hb_000012_350 0.0943822013 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
12 Hb_050898_030 0.0944508185 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001136_040 0.0955431455 - - amino acid transporter, putative [Ricinus communis]
14 Hb_002918_270 0.0956356982 - - PREDICTED: protein E6-like [Populus euphratica]
15 Hb_007122_020 0.0960538177 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
16 Hb_002874_200 0.098336489 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
17 Hb_009785_030 0.0993964164 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
18 Hb_036520_030 0.1000563528 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
19 Hb_000849_030 0.1009170518 - - PREDICTED: fimbrin-2 [Jatropha curcas]
20 Hb_000827_020 0.1020121124 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_012132_050 Hb_012132_050 Hb_007904_280 Hb_007904_280 Hb_012132_050--Hb_007904_280 Hb_009783_010 Hb_009783_010 Hb_012132_050--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_012132_050--Hb_001898_040 Hb_001136_160 Hb_001136_160 Hb_012132_050--Hb_001136_160 Hb_001408_080 Hb_001408_080 Hb_012132_050--Hb_001408_080 Hb_003466_010 Hb_003466_010 Hb_012132_050--Hb_003466_010 Hb_007904_280--Hb_009783_010 Hb_004223_060 Hb_004223_060 Hb_007904_280--Hb_004223_060 Hb_000878_050 Hb_000878_050 Hb_007904_280--Hb_000878_050 Hb_007904_280--Hb_001136_160 Hb_000012_350 Hb_000012_350 Hb_007904_280--Hb_000012_350 Hb_009783_010--Hb_001898_040 Hb_001136_040 Hb_001136_040 Hb_009783_010--Hb_001136_040 Hb_009783_010--Hb_001136_160 Hb_007185_050 Hb_007185_050 Hb_009783_010--Hb_007185_050 Hb_001898_040--Hb_001136_160 Hb_010962_020 Hb_010962_020 Hb_001898_040--Hb_010962_020 Hb_001898_040--Hb_001136_040 Hb_001898_040--Hb_007185_050 Hb_001136_160--Hb_001136_040 Hb_007122_020 Hb_007122_020 Hb_001136_160--Hb_007122_020 Hb_001136_160--Hb_010962_020 Hb_001110_060 Hb_001110_060 Hb_001408_080--Hb_001110_060 Hb_000849_030 Hb_000849_030 Hb_001408_080--Hb_000849_030 Hb_001427_100 Hb_001427_100 Hb_001408_080--Hb_001427_100 Hb_005111_020 Hb_005111_020 Hb_001408_080--Hb_005111_020 Hb_036520_030 Hb_036520_030 Hb_001408_080--Hb_036520_030 Hb_005648_020 Hb_005648_020 Hb_003466_010--Hb_005648_020 Hb_000093_010 Hb_000093_010 Hb_003466_010--Hb_000093_010 Hb_000866_130 Hb_000866_130 Hb_003466_010--Hb_000866_130 Hb_003466_010--Hb_036520_030 Hb_008021_050 Hb_008021_050 Hb_003466_010--Hb_008021_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.32455 8.91053 23.7733 0.181106 0.259357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0285811 0 0.77729 7.66779

CAGE analysis