Hb_000093_010

Information

Type -
Description -
Location Contig93: 4548-11644
Sequence    

Annotation

kegg
ID rcu:RCOM_0205150
description Ubiquinone biosynthesis protein coq-8, putative
nr
ID XP_002527984.1
description Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
swissprot
ID Q86TW2
description Uncharacterized aarF domain-containing protein kinase 1 OS=Homo sapiens GN=ADCK1 PE=2 SV=2
trembl
ID B9SPR5
description Ubiquinone biosynthesis protein coq-8, putative OS=Ricinus communis GN=RCOM_0205150 PE=4 SV=1
Gene Ontology
ID GO:0005783
description abc1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000093_010 0.0 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
2 Hb_003607_080 0.0728533148 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
3 Hb_003466_010 0.0728606667 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
4 Hb_005648_020 0.0841842946 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
5 Hb_008021_050 0.086537922 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000395_310 0.0883125036 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
7 Hb_001688_030 0.0888037274 - - hypothetical protein JCGZ_10716 [Jatropha curcas]
8 Hb_002388_070 0.0905516274 - - ring finger protein, putative [Ricinus communis]
9 Hb_000866_130 0.0949122922 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
10 Hb_004531_160 0.0969406126 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
11 Hb_001789_230 0.1010981676 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002600_120 0.1013423179 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
13 Hb_003893_180 0.1031462618 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
14 Hb_002260_140 0.105471403 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000408_060 0.105491138 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
16 Hb_004020_030 0.1074497909 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
17 Hb_003849_170 0.1082180997 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
18 Hb_001936_120 0.1089126236 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
19 Hb_010142_060 0.1103500554 - - Blue copper protein precursor, putative [Ricinus communis]
20 Hb_005215_050 0.1104264828 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]

Gene co-expression network

sample Hb_000093_010 Hb_000093_010 Hb_003607_080 Hb_003607_080 Hb_000093_010--Hb_003607_080 Hb_003466_010 Hb_003466_010 Hb_000093_010--Hb_003466_010 Hb_005648_020 Hb_005648_020 Hb_000093_010--Hb_005648_020 Hb_008021_050 Hb_008021_050 Hb_000093_010--Hb_008021_050 Hb_000395_310 Hb_000395_310 Hb_000093_010--Hb_000395_310 Hb_001688_030 Hb_001688_030 Hb_000093_010--Hb_001688_030 Hb_003607_080--Hb_008021_050 Hb_003607_080--Hb_005648_020 Hb_005215_050 Hb_005215_050 Hb_003607_080--Hb_005215_050 Hb_170077_020 Hb_170077_020 Hb_003607_080--Hb_170077_020 Hb_003607_080--Hb_003466_010 Hb_003466_010--Hb_005648_020 Hb_000866_130 Hb_000866_130 Hb_003466_010--Hb_000866_130 Hb_036520_030 Hb_036520_030 Hb_003466_010--Hb_036520_030 Hb_012132_050 Hb_012132_050 Hb_003466_010--Hb_012132_050 Hb_003466_010--Hb_008021_050 Hb_009736_020 Hb_009736_020 Hb_005648_020--Hb_009736_020 Hb_003849_170 Hb_003849_170 Hb_005648_020--Hb_003849_170 Hb_005648_020--Hb_170077_020 Hb_008021_050--Hb_001688_030 Hb_120040_010 Hb_120040_010 Hb_008021_050--Hb_120040_010 Hb_007919_010 Hb_007919_010 Hb_008021_050--Hb_007919_010 Hb_002388_070 Hb_002388_070 Hb_000395_310--Hb_002388_070 Hb_002874_200 Hb_002874_200 Hb_000395_310--Hb_002874_200 Hb_004032_290 Hb_004032_290 Hb_000395_310--Hb_004032_290 Hb_000230_410 Hb_000230_410 Hb_000395_310--Hb_000230_410 Hb_000395_310--Hb_003466_010 Hb_010142_060 Hb_010142_060 Hb_000395_310--Hb_010142_060 Hb_154038_040 Hb_154038_040 Hb_001688_030--Hb_154038_040 Hb_001360_020 Hb_001360_020 Hb_001688_030--Hb_001360_020 Hb_002384_030 Hb_002384_030 Hb_001688_030--Hb_002384_030 Hb_133492_010 Hb_133492_010 Hb_001688_030--Hb_133492_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.299866 0.562632 2.80517 0.0138014 0.0124471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0123058 0 0.156252 0.681728

CAGE analysis