Hb_004032_290

Information

Type -
Description -
Location Contig4032: 295971-296902
Sequence    

Annotation

kegg
ID rcu:RCOM_1602460
description protein binding protein, putative
nr
ID XP_002510748.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R8V5
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1602460 PE=4 SV=1
Gene Ontology
ID GO:0047134
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_290 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_002874_200 0.0648243111 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
3 Hb_036520_030 0.0651579603 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
4 Hb_007185_050 0.066513719 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
5 Hb_000676_230 0.0673690346 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
6 Hb_000395_310 0.071243581 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
7 Hb_000230_410 0.0717206189 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
8 Hb_000009_280 0.0750554448 - - Calmodulin, putative [Ricinus communis]
9 Hb_004650_120 0.0763352029 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
10 Hb_004020_030 0.07639046 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
11 Hb_002388_070 0.0765193801 - - ring finger protein, putative [Ricinus communis]
12 Hb_133974_010 0.0808635586 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
13 Hb_000866_130 0.0820041997 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
14 Hb_010142_060 0.0847963376 - - Blue copper protein precursor, putative [Ricinus communis]
15 Hb_001136_040 0.085500816 - - amino acid transporter, putative [Ricinus communis]
16 Hb_009783_010 0.085748521 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
17 Hb_001898_040 0.0874572709 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
18 Hb_003466_010 0.0889137009 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
19 Hb_147006_010 0.0914846114 - - receptor like protein 35 [Arabidopsis thaliana]
20 Hb_010164_030 0.0987299446 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004032_290 Hb_004032_290 Hb_002874_200 Hb_002874_200 Hb_004032_290--Hb_002874_200 Hb_036520_030 Hb_036520_030 Hb_004032_290--Hb_036520_030 Hb_007185_050 Hb_007185_050 Hb_004032_290--Hb_007185_050 Hb_000676_230 Hb_000676_230 Hb_004032_290--Hb_000676_230 Hb_000395_310 Hb_000395_310 Hb_004032_290--Hb_000395_310 Hb_000230_410 Hb_000230_410 Hb_004032_290--Hb_000230_410 Hb_002874_200--Hb_000230_410 Hb_002388_070 Hb_002388_070 Hb_002874_200--Hb_002388_070 Hb_002874_200--Hb_000395_310 Hb_002874_200--Hb_007185_050 Hb_001136_040 Hb_001136_040 Hb_002874_200--Hb_001136_040 Hb_001408_080 Hb_001408_080 Hb_036520_030--Hb_001408_080 Hb_001427_100 Hb_001427_100 Hb_036520_030--Hb_001427_100 Hb_036520_030--Hb_002874_200 Hb_003466_010 Hb_003466_010 Hb_036520_030--Hb_003466_010 Hb_010164_030 Hb_010164_030 Hb_036520_030--Hb_010164_030 Hb_007185_050--Hb_001136_040 Hb_000009_280 Hb_000009_280 Hb_007185_050--Hb_000009_280 Hb_009783_010 Hb_009783_010 Hb_007185_050--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_007185_050--Hb_001898_040 Hb_010142_060 Hb_010142_060 Hb_000676_230--Hb_010142_060 Hb_000368_050 Hb_000368_050 Hb_000676_230--Hb_000368_050 Hb_133974_010 Hb_133974_010 Hb_000676_230--Hb_133974_010 Hb_004650_120 Hb_004650_120 Hb_000676_230--Hb_004650_120 Hb_000364_090 Hb_000364_090 Hb_000676_230--Hb_000364_090 Hb_000395_310--Hb_002388_070 Hb_000395_310--Hb_000230_410 Hb_000395_310--Hb_003466_010 Hb_000395_310--Hb_010142_060 Hb_000230_410--Hb_000009_280 Hb_000230_410--Hb_009783_010 Hb_000230_410--Hb_007185_050 Hb_000230_410--Hb_001136_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.592 3.54588 13.9494 0 0.0247886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.471555 5.71977

CAGE analysis