Hb_002388_070

Information

Type -
Description -
Location Contig2388: 105122-106216
Sequence    

Annotation

kegg
ID rcu:RCOM_1279010
description ring finger protein, putative
nr
ID XP_002527667.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q7XLY8
description E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04g0590900 PE=2 SV=2
trembl
ID B9SNU8
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_1279010 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase os04g0590900-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25014: 104635-105203 , PASA_asmbl_25016: 105216-105563
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002388_070 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_000395_310 0.0444048046 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
3 Hb_002874_200 0.0644336691 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
4 Hb_002997_150 0.0703584096 - - hypothetical protein RCOM_1406750 [Ricinus communis]
5 Hb_004032_290 0.0765193801 - - protein binding protein, putative [Ricinus communis]
6 Hb_004020_030 0.0797222697 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
7 Hb_000230_410 0.0840419243 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
8 Hb_000093_010 0.0905516274 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
9 Hb_036520_030 0.0935007813 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
10 Hb_011381_050 0.0959104755 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
11 Hb_000449_070 0.0971653901 - - unnamed protein product [Vitis vinifera]
12 Hb_003466_010 0.0973565868 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
13 Hb_004917_020 0.0977583028 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
14 Hb_001225_050 0.0981415258 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
15 Hb_000866_130 0.0987710872 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
16 Hb_001936_120 0.0995986836 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
17 Hb_028514_010 0.0996242529 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
18 Hb_009783_010 0.1013607411 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
19 Hb_010142_060 0.1037471672 - - Blue copper protein precursor, putative [Ricinus communis]
20 Hb_009785_030 0.1038528258 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]

Gene co-expression network

sample Hb_002388_070 Hb_002388_070 Hb_000395_310 Hb_000395_310 Hb_002388_070--Hb_000395_310 Hb_002874_200 Hb_002874_200 Hb_002388_070--Hb_002874_200 Hb_002997_150 Hb_002997_150 Hb_002388_070--Hb_002997_150 Hb_004032_290 Hb_004032_290 Hb_002388_070--Hb_004032_290 Hb_004020_030 Hb_004020_030 Hb_002388_070--Hb_004020_030 Hb_000230_410 Hb_000230_410 Hb_002388_070--Hb_000230_410 Hb_000395_310--Hb_002874_200 Hb_000395_310--Hb_004032_290 Hb_000395_310--Hb_000230_410 Hb_003466_010 Hb_003466_010 Hb_000395_310--Hb_003466_010 Hb_010142_060 Hb_010142_060 Hb_000395_310--Hb_010142_060 Hb_002874_200--Hb_000230_410 Hb_002874_200--Hb_004032_290 Hb_007185_050 Hb_007185_050 Hb_002874_200--Hb_007185_050 Hb_001136_040 Hb_001136_040 Hb_002874_200--Hb_001136_040 Hb_001225_050 Hb_001225_050 Hb_002997_150--Hb_001225_050 Hb_028514_010 Hb_028514_010 Hb_002997_150--Hb_028514_010 Hb_002997_150--Hb_004020_030 Hb_000077_250 Hb_000077_250 Hb_002997_150--Hb_000077_250 Hb_000358_060 Hb_000358_060 Hb_002997_150--Hb_000358_060 Hb_036520_030 Hb_036520_030 Hb_004032_290--Hb_036520_030 Hb_004032_290--Hb_007185_050 Hb_000676_230 Hb_000676_230 Hb_004032_290--Hb_000676_230 Hb_004032_290--Hb_000230_410 Hb_004020_030--Hb_004032_290 Hb_001104_060 Hb_001104_060 Hb_004020_030--Hb_001104_060 Hb_004020_030--Hb_007185_050 Hb_004020_030--Hb_000230_410 Hb_000009_280 Hb_000009_280 Hb_000230_410--Hb_000009_280 Hb_009783_010 Hb_009783_010 Hb_000230_410--Hb_009783_010 Hb_000230_410--Hb_007185_050 Hb_000230_410--Hb_001136_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0940244 1.42618 2.5014 11.9623 0.0557036 0.0735872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.371906 4.035

CAGE analysis