Hb_000358_060

Information

Type -
Description -
Location Contig358: 69961-71019
Sequence    

Annotation

kegg
ID rcu:RCOM_1411110
description Protein P21, putative
nr
ID XP_012071359.1
description PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
swissprot
ID P28493
description Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1
trembl
ID A0A067KRY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05044 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36885: 69900-70443 , PASA_asmbl_36886: 70621-70870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000358_060 0.0 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
2 Hb_002997_150 0.0868103261 - - hypothetical protein RCOM_1406750 [Ricinus communis]
3 Hb_001225_050 0.0930463474 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
4 Hb_000230_410 0.0945742505 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
5 Hb_001936_120 0.0970090629 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
6 Hb_000077_250 0.0996195376 - - hypothetical protein JCGZ_25802 [Jatropha curcas]
7 Hb_002388_070 0.1063320207 - - ring finger protein, putative [Ricinus communis]
8 Hb_003399_110 0.1095283761 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001279_400 0.1105457802 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
10 Hb_009070_020 0.1114630522 - - PREDICTED: uncharacterized protein LOC102612959 [Citrus sinensis]
11 Hb_004650_120 0.1122682835 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
12 Hb_004020_030 0.1138845785 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
13 Hb_000009_280 0.1168736869 - - Calmodulin, putative [Ricinus communis]
14 Hb_000449_070 0.1189565922 - - unnamed protein product [Vitis vinifera]
15 Hb_000395_310 0.1197809429 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_004032_290 0.1201150498 - - protein binding protein, putative [Ricinus communis]
17 Hb_011381_050 0.1220245666 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
18 Hb_002894_080 0.1235532552 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007101_070 0.1245970858 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
20 Hb_009783_010 0.1260446151 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]

Gene co-expression network

sample Hb_000358_060 Hb_000358_060 Hb_002997_150 Hb_002997_150 Hb_000358_060--Hb_002997_150 Hb_001225_050 Hb_001225_050 Hb_000358_060--Hb_001225_050 Hb_000230_410 Hb_000230_410 Hb_000358_060--Hb_000230_410 Hb_001936_120 Hb_001936_120 Hb_000358_060--Hb_001936_120 Hb_000077_250 Hb_000077_250 Hb_000358_060--Hb_000077_250 Hb_002388_070 Hb_002388_070 Hb_000358_060--Hb_002388_070 Hb_002997_150--Hb_001225_050 Hb_002997_150--Hb_002388_070 Hb_028514_010 Hb_028514_010 Hb_002997_150--Hb_028514_010 Hb_004020_030 Hb_004020_030 Hb_002997_150--Hb_004020_030 Hb_002997_150--Hb_000077_250 Hb_135052_010 Hb_135052_010 Hb_001225_050--Hb_135052_010 Hb_001225_050--Hb_000077_250 Hb_001225_050--Hb_002388_070 Hb_011224_070 Hb_011224_070 Hb_001225_050--Hb_011224_070 Hb_000009_280 Hb_000009_280 Hb_000230_410--Hb_000009_280 Hb_002874_200 Hb_002874_200 Hb_000230_410--Hb_002874_200 Hb_004032_290 Hb_004032_290 Hb_000230_410--Hb_004032_290 Hb_009783_010 Hb_009783_010 Hb_000230_410--Hb_009783_010 Hb_007185_050 Hb_007185_050 Hb_000230_410--Hb_007185_050 Hb_001136_040 Hb_001136_040 Hb_000230_410--Hb_001136_040 Hb_029791_010 Hb_029791_010 Hb_001936_120--Hb_029791_010 Hb_036520_030 Hb_036520_030 Hb_001936_120--Hb_036520_030 Hb_005305_040 Hb_005305_040 Hb_001936_120--Hb_005305_040 Hb_011381_050 Hb_011381_050 Hb_001936_120--Hb_011381_050 Hb_001936_120--Hb_002388_070 Hb_020375_010 Hb_020375_010 Hb_000077_250--Hb_020375_010 Hb_004650_120 Hb_004650_120 Hb_000077_250--Hb_004650_120 Hb_000077_250--Hb_007185_050 Hb_000077_250--Hb_004020_030 Hb_009070_020 Hb_009070_020 Hb_000077_250--Hb_009070_020 Hb_000395_310 Hb_000395_310 Hb_002388_070--Hb_000395_310 Hb_002388_070--Hb_002874_200 Hb_002388_070--Hb_004032_290 Hb_002388_070--Hb_004020_030 Hb_002388_070--Hb_000230_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0263299 0.648928 1.15311 5.63386 0.178051 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0475494 0 0.134358 2.50128

CAGE analysis