Hb_002997_150

Information

Type -
Description -
Location Contig2997: 124430-126355
Sequence    

Annotation

kegg
ID rcu:RCOM_1406750
description hypothetical protein
nr
ID XP_002528407.1
description hypothetical protein RCOM_1406750 [Ricinus communis]
swissprot
ID Q9FG14
description Myosin-binding protein 7 OS=Arabidopsis thaliana GN=MYOB7 PE=1 SV=1
trembl
ID B9SQY8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1406750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31309: 124378-124787 , PASA_asmbl_31311: 125393-125636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002997_150 0.0 - - hypothetical protein RCOM_1406750 [Ricinus communis]
2 Hb_001225_050 0.062661768 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
3 Hb_002388_070 0.0703584096 - - ring finger protein, putative [Ricinus communis]
4 Hb_028514_010 0.0732228406 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
5 Hb_004020_030 0.0754798625 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
6 Hb_000077_250 0.0827330721 - - hypothetical protein JCGZ_25802 [Jatropha curcas]
7 Hb_000358_060 0.0868103261 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
8 Hb_000449_070 0.0883753313 - - unnamed protein product [Vitis vinifera]
9 Hb_000395_310 0.0965728817 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
10 Hb_000230_410 0.0989420502 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
11 Hb_002874_200 0.0996683843 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
12 Hb_011381_050 0.10054226 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
13 Hb_001104_060 0.1036341677 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
14 Hb_006153_140 0.1049130318 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
15 Hb_115572_010 0.1065151458 - - PREDICTED: beta-galactosidase 6 [Jatropha curcas]
16 Hb_007185_050 0.1093254616 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
17 Hb_004032_290 0.1094480844 - - protein binding protein, putative [Ricinus communis]
18 Hb_004650_120 0.1103530438 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
19 Hb_000336_120 0.1114981794 - - PREDICTED: mavicyanin [Populus euphratica]
20 Hb_009783_010 0.1120194404 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]

Gene co-expression network

sample Hb_002997_150 Hb_002997_150 Hb_001225_050 Hb_001225_050 Hb_002997_150--Hb_001225_050 Hb_002388_070 Hb_002388_070 Hb_002997_150--Hb_002388_070 Hb_028514_010 Hb_028514_010 Hb_002997_150--Hb_028514_010 Hb_004020_030 Hb_004020_030 Hb_002997_150--Hb_004020_030 Hb_000077_250 Hb_000077_250 Hb_002997_150--Hb_000077_250 Hb_000358_060 Hb_000358_060 Hb_002997_150--Hb_000358_060 Hb_135052_010 Hb_135052_010 Hb_001225_050--Hb_135052_010 Hb_001225_050--Hb_000358_060 Hb_001225_050--Hb_000077_250 Hb_001225_050--Hb_002388_070 Hb_011224_070 Hb_011224_070 Hb_001225_050--Hb_011224_070 Hb_000395_310 Hb_000395_310 Hb_002388_070--Hb_000395_310 Hb_002874_200 Hb_002874_200 Hb_002388_070--Hb_002874_200 Hb_004032_290 Hb_004032_290 Hb_002388_070--Hb_004032_290 Hb_002388_070--Hb_004020_030 Hb_000230_410 Hb_000230_410 Hb_002388_070--Hb_000230_410 Hb_006153_140 Hb_006153_140 Hb_028514_010--Hb_006153_140 Hb_009079_020 Hb_009079_020 Hb_028514_010--Hb_009079_020 Hb_028514_010--Hb_002388_070 Hb_028514_010--Hb_004020_030 Hb_135757_030 Hb_135757_030 Hb_028514_010--Hb_135757_030 Hb_004020_030--Hb_004032_290 Hb_001104_060 Hb_001104_060 Hb_004020_030--Hb_001104_060 Hb_007185_050 Hb_007185_050 Hb_004020_030--Hb_007185_050 Hb_004020_030--Hb_000230_410 Hb_020375_010 Hb_020375_010 Hb_000077_250--Hb_020375_010 Hb_004650_120 Hb_004650_120 Hb_000077_250--Hb_004650_120 Hb_000077_250--Hb_007185_050 Hb_000077_250--Hb_004020_030 Hb_009070_020 Hb_009070_020 Hb_000077_250--Hb_009070_020 Hb_000358_060--Hb_000230_410 Hb_001936_120 Hb_001936_120 Hb_000358_060--Hb_001936_120 Hb_000358_060--Hb_000077_250 Hb_000358_060--Hb_002388_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0904619 1.13056 2.47005 13.3968 0.219599 0.0697767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.157659 4.72712

CAGE analysis