Hb_135757_030

Information

Type -
Description -
Location Contig135757: 47136-48311
Sequence    

Annotation

kegg
ID egr:104418931
description actin-depolymerizing factor 5
nr
ID XP_012081752.1
description PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
swissprot
ID Q9ZNT3
description Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1
trembl
ID A0A067K3K1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18795 PE=4 SV=1
Gene Ontology
ID GO:0015629
description actin-depolymerizing factor 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09956: 47099-48319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135757_030 0.0 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
2 Hb_002260_140 0.0675265161 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001500_020 0.0682804961 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_001818_010 0.07595442 - - Disease resistance response protein, putative [Ricinus communis]
5 Hb_003175_120 0.0779975934 - - PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]
6 Hb_003598_050 0.0792148888 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
7 Hb_006351_050 0.0803658667 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
8 Hb_009079_020 0.0820856568 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
9 Hb_006153_140 0.0829233363 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
10 Hb_112950_010 0.0883247098 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
11 Hb_180088_010 0.0895908819 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000172_450 0.0949671055 - - Uncharacterized protein TCM_001203 [Theobroma cacao]
13 Hb_013399_060 0.0981330343 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
14 Hb_000408_060 0.0995040129 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
15 Hb_003680_240 0.1012138522 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
16 Hb_051212_020 0.1018322929 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
17 Hb_140627_040 0.1050153502 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
18 Hb_000497_080 0.1056447454 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009421_060 0.1060978174 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
20 Hb_021596_050 0.1066949352 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_135757_030 Hb_135757_030 Hb_002260_140 Hb_002260_140 Hb_135757_030--Hb_002260_140 Hb_001500_020 Hb_001500_020 Hb_135757_030--Hb_001500_020 Hb_001818_010 Hb_001818_010 Hb_135757_030--Hb_001818_010 Hb_003175_120 Hb_003175_120 Hb_135757_030--Hb_003175_120 Hb_003598_050 Hb_003598_050 Hb_135757_030--Hb_003598_050 Hb_006351_050 Hb_006351_050 Hb_135757_030--Hb_006351_050 Hb_002260_140--Hb_001818_010 Hb_009079_020 Hb_009079_020 Hb_002260_140--Hb_009079_020 Hb_002260_140--Hb_001500_020 Hb_000172_450 Hb_000172_450 Hb_002260_140--Hb_000172_450 Hb_112950_010 Hb_112950_010 Hb_002260_140--Hb_112950_010 Hb_001500_020--Hb_006351_050 Hb_180088_010 Hb_180088_010 Hb_001500_020--Hb_180088_010 Hb_001500_020--Hb_003598_050 Hb_001500_020--Hb_112950_010 Hb_001500_020--Hb_000172_450 Hb_051212_020 Hb_051212_020 Hb_001818_010--Hb_051212_020 Hb_001818_010--Hb_009079_020 Hb_000866_130 Hb_000866_130 Hb_001818_010--Hb_000866_130 Hb_001818_010--Hb_112950_010 Hb_003175_120--Hb_009079_020 Hb_003175_120--Hb_002260_140 Hb_003175_120--Hb_001500_020 Hb_006153_140 Hb_006153_140 Hb_003175_120--Hb_006153_140 Hb_021596_050 Hb_021596_050 Hb_003175_120--Hb_021596_050 Hb_003598_050--Hb_112950_010 Hb_003598_050--Hb_006351_050 Hb_000497_080 Hb_000497_080 Hb_003598_050--Hb_000497_080 Hb_002686_220 Hb_002686_220 Hb_003598_050--Hb_002686_220 Hb_003598_050--Hb_180088_010 Hb_006351_050--Hb_180088_010 Hb_006351_050--Hb_000497_080 Hb_006351_050--Hb_112950_010 Hb_007919_010 Hb_007919_010 Hb_006351_050--Hb_007919_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.541085 4.72873 10.8766 63.7874 0.389734 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.41115 9.10488

CAGE analysis