Hb_003598_050

Information

Type -
Description -
Location Contig3598: 134477-137647
Sequence    

Annotation

kegg
ID rcu:RCOM_0800450
description Receptor protein kinase CLAVATA1 precursor, putative (EC:1.3.1.74)
nr
ID XP_002516515.1
description Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
swissprot
ID O82318
description Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=2 SV=1
trembl
ID B9RRZ6
description Receptor protein kinase CLAVATA1, putative OS=Ricinus communis GN=RCOM_0800450 PE=4 SV=1
Gene Ontology
ID GO:0005783
description probably inactive leucine-rich repeat receptor-like protein kinase at2g25790

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37087: 134471-135931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003598_050 0.0 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
2 Hb_112950_010 0.0532242738 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
3 Hb_001500_020 0.0616798443 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_006351_050 0.0661226821 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
5 Hb_000497_080 0.0701114342 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002686_220 0.0750907283 - - PREDICTED: expansin-A15-like [Jatropha curcas]
7 Hb_180088_010 0.0755564466 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_135757_030 0.0792148888 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
9 Hb_006153_140 0.080283465 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
10 Hb_009079_020 0.0808905924 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
11 Hb_013399_060 0.0837621559 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
12 Hb_116349_080 0.0838772382 - - Nectarin-1 precursor, putative [Ricinus communis]
13 Hb_003680_240 0.084030073 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
14 Hb_009421_060 0.0860148929 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
15 Hb_003197_050 0.0863851581 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
16 Hb_118934_010 0.0865696859 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
17 Hb_000521_060 0.087279818 - - PREDICTED: protein YLS3-like [Jatropha curcas]
18 Hb_002260_140 0.0882419687 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006573_120 0.0883041383 - - PREDICTED: DUF21 domain-containing protein At5g52790 [Jatropha curcas]
20 Hb_001818_010 0.0889464733 - - Disease resistance response protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003598_050 Hb_003598_050 Hb_112950_010 Hb_112950_010 Hb_003598_050--Hb_112950_010 Hb_001500_020 Hb_001500_020 Hb_003598_050--Hb_001500_020 Hb_006351_050 Hb_006351_050 Hb_003598_050--Hb_006351_050 Hb_000497_080 Hb_000497_080 Hb_003598_050--Hb_000497_080 Hb_002686_220 Hb_002686_220 Hb_003598_050--Hb_002686_220 Hb_180088_010 Hb_180088_010 Hb_003598_050--Hb_180088_010 Hb_000083_200 Hb_000083_200 Hb_112950_010--Hb_000083_200 Hb_112950_010--Hb_002686_220 Hb_112950_010--Hb_001500_020 Hb_001349_040 Hb_001349_040 Hb_112950_010--Hb_001349_040 Hb_112950_010--Hb_180088_010 Hb_001500_020--Hb_006351_050 Hb_001500_020--Hb_180088_010 Hb_135757_030 Hb_135757_030 Hb_001500_020--Hb_135757_030 Hb_000172_450 Hb_000172_450 Hb_001500_020--Hb_000172_450 Hb_006351_050--Hb_180088_010 Hb_006351_050--Hb_000497_080 Hb_006351_050--Hb_112950_010 Hb_007919_010 Hb_007919_010 Hb_006351_050--Hb_007919_010 Hb_003197_050 Hb_003197_050 Hb_000497_080--Hb_003197_050 Hb_000497_080--Hb_180088_010 Hb_000497_080--Hb_001500_020 Hb_017061_010 Hb_017061_010 Hb_000497_080--Hb_017061_010 Hb_006153_140 Hb_006153_140 Hb_002686_220--Hb_006153_140 Hb_009079_020 Hb_009079_020 Hb_002686_220--Hb_009079_020 Hb_006573_120 Hb_006573_120 Hb_002686_220--Hb_006573_120 Hb_015175_070 Hb_015175_070 Hb_002686_220--Hb_015175_070 Hb_180088_010--Hb_007919_010 Hb_009421_060 Hb_009421_060 Hb_180088_010--Hb_009421_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00820095 0.709761 1.64618 12.1322 0.0190391 0.0362142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.112619 1.61418

CAGE analysis