Hb_001349_040

Information

Type transcription factor
Description TF Family: bHLH
Location Contig1349: 42401-45006
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11490g
description POPTRDRAFT_766018; basic helix-loop-helix family protein
nr
ID XP_011021594.1
description PREDICTED: transcription factor bHLH30-like [Populus euphratica]
swissprot
ID Q9S7Y1
description Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1 SV=1
trembl
ID B9HIY4
description Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0008s11490g PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001349_040 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
2 Hb_000083_200 0.0326318187 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000699_220 0.0611777065 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
4 Hb_112950_010 0.0685689461 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
5 Hb_000497_030 0.069345141 - - -
6 Hb_006717_060 0.0706100869 - - PREDICTED: peroxidase 42 [Jatropha curcas]
7 Hb_000310_050 0.0718595951 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
8 Hb_000336_120 0.0722103837 - - PREDICTED: mavicyanin [Populus euphratica]
9 Hb_006573_120 0.075873814 - - PREDICTED: DUF21 domain-containing protein At5g52790 [Jatropha curcas]
10 Hb_015175_070 0.076361698 - - cysteine protease, putative [Ricinus communis]
11 Hb_071079_040 0.0785399655 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
12 Hb_006153_140 0.0830642808 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
13 Hb_115572_010 0.0864903933 - - PREDICTED: beta-galactosidase 6 [Jatropha curcas]
14 Hb_002686_220 0.0919014535 - - PREDICTED: expansin-A15-like [Jatropha curcas]
15 Hb_009421_060 0.0927980136 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
16 Hb_001104_060 0.0948322347 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
17 Hb_012114_090 0.0952879713 - - tubulin beta chain, putative [Ricinus communis]
18 Hb_000866_130 0.0971159561 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
19 Hb_009079_020 0.0974905033 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
20 Hb_001369_480 0.0991965699 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]

Gene co-expression network

sample Hb_001349_040 Hb_001349_040 Hb_000083_200 Hb_000083_200 Hb_001349_040--Hb_000083_200 Hb_000699_220 Hb_000699_220 Hb_001349_040--Hb_000699_220 Hb_112950_010 Hb_112950_010 Hb_001349_040--Hb_112950_010 Hb_000497_030 Hb_000497_030 Hb_001349_040--Hb_000497_030 Hb_006717_060 Hb_006717_060 Hb_001349_040--Hb_006717_060 Hb_000310_050 Hb_000310_050 Hb_001349_040--Hb_000310_050 Hb_000083_200--Hb_112950_010 Hb_009421_060 Hb_009421_060 Hb_000083_200--Hb_009421_060 Hb_000083_200--Hb_000497_030 Hb_000083_200--Hb_006717_060 Hb_000083_200--Hb_000699_220 Hb_000699_220--Hb_006717_060 Hb_012114_090 Hb_012114_090 Hb_000699_220--Hb_012114_090 Hb_000699_220--Hb_000497_030 Hb_000336_120 Hb_000336_120 Hb_000699_220--Hb_000336_120 Hb_005616_020 Hb_005616_020 Hb_000699_220--Hb_005616_020 Hb_003598_050 Hb_003598_050 Hb_112950_010--Hb_003598_050 Hb_002686_220 Hb_002686_220 Hb_112950_010--Hb_002686_220 Hb_001500_020 Hb_001500_020 Hb_112950_010--Hb_001500_020 Hb_180088_010 Hb_180088_010 Hb_112950_010--Hb_180088_010 Hb_000497_030--Hb_006717_060 Hb_003580_020 Hb_003580_020 Hb_000497_030--Hb_003580_020 Hb_071079_040 Hb_071079_040 Hb_000497_030--Hb_071079_040 Hb_006717_060--Hb_003580_020 Hb_006717_060--Hb_012114_090 Hb_006717_060--Hb_000336_120 Hb_006573_120 Hb_006573_120 Hb_000310_050--Hb_006573_120 Hb_000310_050--Hb_000336_120 Hb_015175_070 Hb_015175_070 Hb_000310_050--Hb_015175_070 Hb_000310_050--Hb_012114_090 Hb_000310_050--Hb_000699_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.429093 0.979084 6.94334 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0253304 1.69286

CAGE analysis