Hb_006573_120

Information

Type -
Description -
Location Contig6573: 75252-78255
Sequence    

Annotation

kegg
ID rcu:RCOM_1582020
description hypothetical protein
nr
ID XP_012090725.1
description PREDICTED: DUF21 domain-containing protein At5g52790 [Jatropha curcas]
swissprot
ID Q9LTD8
description DUF21 domain-containing protein At5g52790 OS=Arabidopsis thaliana GN=CBSDUF5 PE=2 SV=2
trembl
ID B9RIS4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1582020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_120 0.0 - - PREDICTED: DUF21 domain-containing protein At5g52790 [Jatropha curcas]
2 Hb_009158_010 0.0495783977 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
3 Hb_000310_050 0.0496075526 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_112950_010 0.0706912033 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
5 Hb_118934_010 0.0732715222 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
6 Hb_001349_040 0.075873814 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
7 Hb_002686_220 0.0759039852 - - PREDICTED: expansin-A15-like [Jatropha curcas]
8 Hb_003598_050 0.0883041383 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
9 Hb_000497_030 0.0888951947 - - -
10 Hb_000336_120 0.0915224006 - - PREDICTED: mavicyanin [Populus euphratica]
11 Hb_015175_070 0.092520661 - - cysteine protease, putative [Ricinus communis]
12 Hb_000699_220 0.0955512954 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
13 Hb_000083_200 0.0962211687 - - conserved hypothetical protein [Ricinus communis]
14 Hb_116349_080 0.0976718719 - - Nectarin-1 precursor, putative [Ricinus communis]
15 Hb_009079_010 0.0979090557 - - JHL18I08.8 [Jatropha curcas]
16 Hb_011224_030 0.0995531637 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
17 Hb_006717_060 0.1009722803 - - PREDICTED: peroxidase 42 [Jatropha curcas]
18 Hb_000521_060 0.1017179155 - - PREDICTED: protein YLS3-like [Jatropha curcas]
19 Hb_055276_010 0.1021680416 - - hypothetical protein POPTR_0003s02950g [Populus trichocarpa]
20 Hb_000155_030 0.1024648066 - - PREDICTED: uncharacterized protein LOC105649591 [Jatropha curcas]

Gene co-expression network

sample Hb_006573_120 Hb_006573_120 Hb_009158_010 Hb_009158_010 Hb_006573_120--Hb_009158_010 Hb_000310_050 Hb_000310_050 Hb_006573_120--Hb_000310_050 Hb_112950_010 Hb_112950_010 Hb_006573_120--Hb_112950_010 Hb_118934_010 Hb_118934_010 Hb_006573_120--Hb_118934_010 Hb_001349_040 Hb_001349_040 Hb_006573_120--Hb_001349_040 Hb_002686_220 Hb_002686_220 Hb_006573_120--Hb_002686_220 Hb_025557_090 Hb_025557_090 Hb_009158_010--Hb_025557_090 Hb_116349_080 Hb_116349_080 Hb_009158_010--Hb_116349_080 Hb_009158_010--Hb_118934_010 Hb_022250_140 Hb_022250_140 Hb_009158_010--Hb_022250_140 Hb_000155_030 Hb_000155_030 Hb_009158_010--Hb_000155_030 Hb_000336_120 Hb_000336_120 Hb_000310_050--Hb_000336_120 Hb_015175_070 Hb_015175_070 Hb_000310_050--Hb_015175_070 Hb_012114_090 Hb_012114_090 Hb_000310_050--Hb_012114_090 Hb_000310_050--Hb_001349_040 Hb_000699_220 Hb_000699_220 Hb_000310_050--Hb_000699_220 Hb_003598_050 Hb_003598_050 Hb_112950_010--Hb_003598_050 Hb_000083_200 Hb_000083_200 Hb_112950_010--Hb_000083_200 Hb_112950_010--Hb_002686_220 Hb_001500_020 Hb_001500_020 Hb_112950_010--Hb_001500_020 Hb_112950_010--Hb_001349_040 Hb_180088_010 Hb_180088_010 Hb_112950_010--Hb_180088_010 Hb_000521_060 Hb_000521_060 Hb_118934_010--Hb_000521_060 Hb_092272_010 Hb_092272_010 Hb_118934_010--Hb_092272_010 Hb_001712_010 Hb_001712_010 Hb_118934_010--Hb_001712_010 Hb_000497_030 Hb_000497_030 Hb_118934_010--Hb_000497_030 Hb_001349_040--Hb_000083_200 Hb_001349_040--Hb_000699_220 Hb_001349_040--Hb_000497_030 Hb_006717_060 Hb_006717_060 Hb_001349_040--Hb_006717_060 Hb_006153_140 Hb_006153_140 Hb_002686_220--Hb_006153_140 Hb_002686_220--Hb_003598_050 Hb_009079_020 Hb_009079_020 Hb_002686_220--Hb_009079_020 Hb_002686_220--Hb_015175_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0193867 0.0711365 0.532134 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.088306

CAGE analysis