Hb_025557_090

Information

Type -
Description -
Location Contig25557: 73812-74464
Sequence    

Annotation

kegg
ID rcu:RCOM_1472390
description hypothetical protein
nr
ID KHN30841.1
description hypothetical protein glysoja_034865 [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2R8K8
description Uncharacterized protein OS=Glycine soja GN=glysoja_034865 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26663: 73692-74144
cDNA
(Sanger)
(ID:Location)		 023_E01.ab1: 73693-73882

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025557_090 0.0 - - hypothetical protein glysoja_034865 [Glycine soja]
2 Hb_009158_010 0.062391951 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
3 Hb_116349_080 0.0677999893 - - Nectarin-1 precursor, putative [Ricinus communis]
4 Hb_000155_030 0.0704283912 - - PREDICTED: uncharacterized protein LOC105649591 [Jatropha curcas]
5 Hb_022250_140 0.0796811236 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
6 Hb_000230_220 0.0848459213 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000964_120 0.0859414289 - - DNA-damage-inducible protein f, putative [Ricinus communis]
8 Hb_006970_180 0.0860536621 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
9 Hb_006816_060 0.0861207308 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
10 Hb_003197_050 0.0867947012 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
11 Hb_118934_010 0.0907715954 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
12 Hb_151436_010 0.0907997814 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
13 Hb_000521_060 0.0937551588 - - PREDICTED: protein YLS3-like [Jatropha curcas]
14 Hb_092272_010 0.093941355 - - -
15 Hb_000087_160 0.0948275096 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_000959_170 0.0951822572 - - Cell division protein kinase 7, putative [Ricinus communis]
17 Hb_006570_170 0.0971841133 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
18 Hb_002232_340 0.0972044928 - - Sodium transporter hkt1-like protein, putative [Theobroma cacao]
19 Hb_008021_080 0.0981549352 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Nicotiana sylvestris]
20 Hb_187906_010 0.1009425304 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]

Gene co-expression network

sample Hb_025557_090 Hb_025557_090 Hb_009158_010 Hb_009158_010 Hb_025557_090--Hb_009158_010 Hb_116349_080 Hb_116349_080 Hb_025557_090--Hb_116349_080 Hb_000155_030 Hb_000155_030 Hb_025557_090--Hb_000155_030 Hb_022250_140 Hb_022250_140 Hb_025557_090--Hb_022250_140 Hb_000230_220 Hb_000230_220 Hb_025557_090--Hb_000230_220 Hb_000964_120 Hb_000964_120 Hb_025557_090--Hb_000964_120 Hb_006573_120 Hb_006573_120 Hb_009158_010--Hb_006573_120 Hb_009158_010--Hb_116349_080 Hb_118934_010 Hb_118934_010 Hb_009158_010--Hb_118934_010 Hb_009158_010--Hb_022250_140 Hb_009158_010--Hb_000155_030 Hb_003197_050 Hb_003197_050 Hb_116349_080--Hb_003197_050 Hb_116349_080--Hb_000155_030 Hb_116349_080--Hb_000230_220 Hb_003598_050 Hb_003598_050 Hb_116349_080--Hb_003598_050 Hb_000155_030--Hb_003197_050 Hb_000155_030--Hb_000964_120 Hb_000155_030--Hb_000230_220 Hb_006570_170 Hb_006570_170 Hb_022250_140--Hb_006570_170 Hb_006970_180 Hb_006970_180 Hb_022250_140--Hb_006970_180 Hb_006816_060 Hb_006816_060 Hb_022250_140--Hb_006816_060 Hb_001634_050 Hb_001634_050 Hb_022250_140--Hb_001634_050 Hb_151436_010 Hb_151436_010 Hb_022250_140--Hb_151436_010 Hb_002073_210 Hb_002073_210 Hb_022250_140--Hb_002073_210 Hb_000230_220--Hb_003197_050 Hb_000152_630 Hb_000152_630 Hb_000230_220--Hb_000152_630 Hb_000188_140 Hb_000188_140 Hb_000230_220--Hb_000188_140 Hb_007292_060 Hb_007292_060 Hb_000964_120--Hb_007292_060 Hb_002326_090 Hb_002326_090 Hb_000964_120--Hb_002326_090 Hb_001006_300 Hb_001006_300 Hb_000964_120--Hb_001006_300 Hb_000964_120--Hb_003197_050 Hb_011218_010 Hb_011218_010 Hb_000964_120--Hb_011218_010 Hb_090210_010 Hb_090210_010 Hb_000964_120--Hb_090210_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.765883 1.43089 15.514 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.18024

CAGE analysis