Hb_000152_630

Information

Type transcription factor
Description TF Family: NAC
Location Contig152: 533153-534397
Sequence    

Annotation

kegg
ID pop:POPTR_0012s14660g
description POPTRDRAFT_773505; hypothetical protein
nr
ID XP_012090429.1
description PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
swissprot
ID Q9FWX2
description NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2
trembl
ID R4NHK6
description NAC transcription factor 019 OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13024: 531786-533518 , PASA_asmbl_13025: 534244-534557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_630 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
2 Hb_000188_140 0.0319212121 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
3 Hb_000230_220 0.0737213701 - - conserved hypothetical protein [Ricinus communis]
4 Hb_069384_010 0.0802484548 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
5 Hb_004102_180 0.087997521 - - zinc finger family protein [Populus trichocarpa]
6 Hb_000087_160 0.0905703125 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_116349_080 0.0923207415 - - Nectarin-1 precursor, putative [Ricinus communis]
8 Hb_000186_090 0.0930612132 - - ACC oxidase 1 [Hevea brasiliensis]
9 Hb_003197_050 0.097132542 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
10 Hb_011218_010 0.100221554 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
11 Hb_006351_050 0.1029060747 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
12 Hb_002030_190 0.1057809665 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000959_170 0.1063362244 - - Cell division protein kinase 7, putative [Ricinus communis]
14 Hb_025557_090 0.108631806 - - hypothetical protein glysoja_034865 [Glycine soja]
15 Hb_019299_010 0.1094548434 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000155_030 0.109731157 - - PREDICTED: uncharacterized protein LOC105649591 [Jatropha curcas]
17 Hb_000497_080 0.1097975512 - - conserved hypothetical protein [Ricinus communis]
18 Hb_084304_010 0.1099208592 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
19 Hb_187906_010 0.1099782203 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
20 Hb_001500_020 0.1119709489 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000152_630 Hb_000152_630 Hb_000188_140 Hb_000188_140 Hb_000152_630--Hb_000188_140 Hb_000230_220 Hb_000230_220 Hb_000152_630--Hb_000230_220 Hb_069384_010 Hb_069384_010 Hb_000152_630--Hb_069384_010 Hb_004102_180 Hb_004102_180 Hb_000152_630--Hb_004102_180 Hb_000087_160 Hb_000087_160 Hb_000152_630--Hb_000087_160 Hb_116349_080 Hb_116349_080 Hb_000152_630--Hb_116349_080 Hb_000188_140--Hb_000230_220 Hb_000188_140--Hb_069384_010 Hb_000186_090 Hb_000186_090 Hb_000188_140--Hb_000186_090 Hb_000188_140--Hb_000087_160 Hb_084304_010 Hb_084304_010 Hb_000188_140--Hb_084304_010 Hb_003197_050 Hb_003197_050 Hb_000230_220--Hb_003197_050 Hb_000230_220--Hb_116349_080 Hb_000155_030 Hb_000155_030 Hb_000230_220--Hb_000155_030 Hb_025557_090 Hb_025557_090 Hb_000230_220--Hb_025557_090 Hb_069384_010--Hb_004102_180 Hb_011218_010 Hb_011218_010 Hb_069384_010--Hb_011218_010 Hb_069384_010--Hb_000186_090 Hb_007290_010 Hb_007290_010 Hb_069384_010--Hb_007290_010 Hb_007292_020 Hb_007292_020 Hb_069384_010--Hb_007292_020 Hb_000175_600 Hb_000175_600 Hb_004102_180--Hb_000175_600 Hb_004102_180--Hb_011218_010 Hb_007292_060 Hb_007292_060 Hb_004102_180--Hb_007292_060 Hb_004102_180--Hb_007290_010 Hb_002326_090 Hb_002326_090 Hb_004102_180--Hb_002326_090 Hb_000959_170 Hb_000959_170 Hb_000087_160--Hb_000959_170 Hb_159791_010 Hb_159791_010 Hb_000087_160--Hb_159791_010 Hb_011930_090 Hb_011930_090 Hb_000087_160--Hb_011930_090 Hb_187906_010 Hb_187906_010 Hb_000087_160--Hb_187906_010 Hb_019299_010 Hb_019299_010 Hb_000087_160--Hb_019299_010 Hb_000087_160--Hb_000230_220 Hb_116349_080--Hb_003197_050 Hb_116349_080--Hb_000155_030 Hb_116349_080--Hb_025557_090 Hb_009158_010 Hb_009158_010 Hb_116349_080--Hb_009158_010 Hb_003598_050 Hb_003598_050 Hb_116349_080--Hb_003598_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0443066 0.891044 1.18618 10.1252 0.0830586 0.0244836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0320971 0.571428

CAGE analysis