Hb_007292_020

Information

Type -
Description -
Location Contig7292: 46096-48365
Sequence    

Annotation

kegg
ID rcu:RCOM_0032550
description Indole-3-acetic acid-amido synthetase GH3.6, putative
nr
ID XP_002533739.1
description Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
swissprot
ID Q9LSQ4
description Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1
trembl
ID B9T670
description Indole-3-acetic acid-amido synthetase GH3.6, putative OS=Ricinus communis GN=RCOM_0032550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55902: 46284-47024 , PASA_asmbl_55903: 47042-48582
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007292_020 0.0 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
2 Hb_069384_010 0.079609451 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
3 Hb_004102_180 0.0926213763 - - zinc finger family protein [Populus trichocarpa]
4 Hb_011218_010 0.0944380398 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
5 Hb_000186_090 0.0951510631 - - ACC oxidase 1 [Hevea brasiliensis]
6 Hb_000224_050 0.0960114641 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007290_010 0.0962303926 - - cytochrome P450, putative [Ricinus communis]
8 Hb_002326_090 0.1002678319 - - amino acid transporter, putative [Ricinus communis]
9 Hb_002232_340 0.1042824662 - - Sodium transporter hkt1-like protein, putative [Theobroma cacao]
10 Hb_007292_060 0.1047002708 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
11 Hb_006603_010 0.1048470047 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
12 Hb_000964_120 0.1053571394 - - DNA-damage-inducible protein f, putative [Ricinus communis]
13 Hb_006846_050 0.1064636627 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
14 Hb_006618_060 0.1080158985 - - PREDICTED: 21 kDa protein [Jatropha curcas]
15 Hb_002925_040 0.1102234224 desease resistance Gene Name: TIR hypothetical protein JCGZ_01545 [Jatropha curcas]
16 Hb_003050_210 0.1111801081 - - PREDICTED: cytochrome b561 domain-containing protein At4g18260-like [Populus euphratica]
17 Hb_000959_170 0.1115738068 - - Cell division protein kinase 7, putative [Ricinus communis]
18 Hb_000381_140 0.1125571469 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
19 Hb_170597_010 0.1127696877 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
20 Hb_004137_090 0.1151948707 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]

Gene co-expression network

sample Hb_007292_020 Hb_007292_020 Hb_069384_010 Hb_069384_010 Hb_007292_020--Hb_069384_010 Hb_004102_180 Hb_004102_180 Hb_007292_020--Hb_004102_180 Hb_011218_010 Hb_011218_010 Hb_007292_020--Hb_011218_010 Hb_000186_090 Hb_000186_090 Hb_007292_020--Hb_000186_090 Hb_000224_050 Hb_000224_050 Hb_007292_020--Hb_000224_050 Hb_007290_010 Hb_007290_010 Hb_007292_020--Hb_007290_010 Hb_069384_010--Hb_004102_180 Hb_069384_010--Hb_011218_010 Hb_069384_010--Hb_000186_090 Hb_069384_010--Hb_007290_010 Hb_000152_630 Hb_000152_630 Hb_069384_010--Hb_000152_630 Hb_000175_600 Hb_000175_600 Hb_004102_180--Hb_000175_600 Hb_004102_180--Hb_011218_010 Hb_007292_060 Hb_007292_060 Hb_004102_180--Hb_007292_060 Hb_004102_180--Hb_007290_010 Hb_002326_090 Hb_002326_090 Hb_004102_180--Hb_002326_090 Hb_011218_010--Hb_007292_060 Hb_011218_010--Hb_000175_600 Hb_000964_120 Hb_000964_120 Hb_011218_010--Hb_000964_120 Hb_011218_010--Hb_002326_090 Hb_029508_040 Hb_029508_040 Hb_000186_090--Hb_029508_040 Hb_000710_130 Hb_000710_130 Hb_000186_090--Hb_000710_130 Hb_074100_010 Hb_074100_010 Hb_000186_090--Hb_074100_010 Hb_002277_020 Hb_002277_020 Hb_000186_090--Hb_002277_020 Hb_000188_140 Hb_000188_140 Hb_000186_090--Hb_000188_140 Hb_018671_010 Hb_018671_010 Hb_000224_050--Hb_018671_010 Hb_002186_120 Hb_002186_120 Hb_000224_050--Hb_002186_120 Hb_178968_010 Hb_178968_010 Hb_000224_050--Hb_178968_010 Hb_003540_010 Hb_003540_010 Hb_000224_050--Hb_003540_010 Hb_000224_020 Hb_000224_020 Hb_000224_050--Hb_000224_020 Hb_000917_220 Hb_000917_220 Hb_000224_050--Hb_000917_220 Hb_003561_020 Hb_003561_020 Hb_007290_010--Hb_003561_020 Hb_004137_090 Hb_004137_090 Hb_007290_010--Hb_004137_090 Hb_010608_040 Hb_010608_040 Hb_007290_010--Hb_010608_040 Hb_007290_010--Hb_011218_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.211223 0.410161 4.34556 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0806898 0.0778283

CAGE analysis