Hb_002186_120

Information

Type -
Description -
Location Contig2186: 128068-134941
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06150g
description POPTRDRAFT_777246; hypothetical protein
nr
ID XP_011040222.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
swissprot
ID O82318
description Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=2 SV=1
trembl
ID B9IIC8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s06150g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22534: 128261-227019 , PASA_asmbl_22535: 128261-159845
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002186_120 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
2 Hb_018671_010 0.0057706585 - - -
3 Hb_000277_040 0.0352914088 - - -
4 Hb_178968_010 0.0509094037 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
5 Hb_000053_150 0.0583817966 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
6 Hb_000224_050 0.0734816057 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003540_010 0.0749404016 - - -
8 Hb_122079_010 0.0801507257 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
9 Hb_000099_110 0.0805660715 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
10 Hb_004137_090 0.0815539682 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
11 Hb_012545_020 0.0817093386 - - PREDICTED: uncharacterized protein LOC105633903 [Jatropha curcas]
12 Hb_000917_220 0.0880948702 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
13 Hb_010812_080 0.088588263 - - PREDICTED: methylesterase 17 [Jatropha curcas]
14 Hb_000203_120 0.0929302808 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000381_140 0.0940743113 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
16 Hb_003216_010 0.0953255371 - - glycosyl hydrolase family protein [Populus trichocarpa]
17 Hb_008727_090 0.0985877476 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
18 Hb_007290_010 0.1015390627 - - cytochrome P450, putative [Ricinus communis]
19 Hb_005057_020 0.1040630234 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
20 Hb_000203_110 0.1092432209 - - -

Gene co-expression network

sample Hb_002186_120 Hb_002186_120 Hb_018671_010 Hb_018671_010 Hb_002186_120--Hb_018671_010 Hb_000277_040 Hb_000277_040 Hb_002186_120--Hb_000277_040 Hb_178968_010 Hb_178968_010 Hb_002186_120--Hb_178968_010 Hb_000053_150 Hb_000053_150 Hb_002186_120--Hb_000053_150 Hb_000224_050 Hb_000224_050 Hb_002186_120--Hb_000224_050 Hb_003540_010 Hb_003540_010 Hb_002186_120--Hb_003540_010 Hb_018671_010--Hb_000277_040 Hb_018671_010--Hb_178968_010 Hb_018671_010--Hb_000053_150 Hb_018671_010--Hb_003540_010 Hb_018671_010--Hb_000224_050 Hb_012545_020 Hb_012545_020 Hb_000277_040--Hb_012545_020 Hb_000099_110 Hb_000099_110 Hb_000277_040--Hb_000099_110 Hb_000277_040--Hb_000053_150 Hb_010812_080 Hb_010812_080 Hb_000277_040--Hb_010812_080 Hb_178968_010--Hb_000053_150 Hb_178968_010--Hb_003540_010 Hb_003216_010 Hb_003216_010 Hb_178968_010--Hb_003216_010 Hb_122079_010 Hb_122079_010 Hb_178968_010--Hb_122079_010 Hb_000053_150--Hb_122079_010 Hb_005057_020 Hb_005057_020 Hb_000053_150--Hb_005057_020 Hb_000053_150--Hb_010812_080 Hb_000224_050--Hb_178968_010 Hb_000224_050--Hb_003540_010 Hb_000224_020 Hb_000224_020 Hb_000224_050--Hb_000224_020 Hb_000917_220 Hb_000917_220 Hb_000224_050--Hb_000917_220 Hb_003540_010--Hb_000917_220 Hb_003540_010--Hb_003216_010 Hb_174829_030 Hb_174829_030 Hb_003540_010--Hb_174829_030 Hb_004137_090 Hb_004137_090 Hb_003540_010--Hb_004137_090 Hb_003540_010--Hb_000053_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.935031 2.73969 25.2569 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis