Hb_003216_010

Information

Type -
Description -
Location Contig3216: 12402-14765
Sequence    

Annotation

kegg
ID pop:POPTR_0014s16250g
description POPTRDRAFT_824350; glycosyl hydrolase family protein
nr
ID XP_002321180.1
description glycosyl hydrolase family protein [Populus trichocarpa]
swissprot
ID Q94CD8
description Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1
trembl
ID B9IAQ9
description Glycosyl hydrolase family protein OS=Populus trichocarpa GN=POPTR_0014s16250g PE=4 SV=1
Gene Ontology
ID GO:0004673
description hydrolyzing o-glycosyl

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003216_010 0.0 - - glycosyl hydrolase family protein [Populus trichocarpa]
2 Hb_005057_020 0.0363804013 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
3 Hb_003540_010 0.0380934125 - - -
4 Hb_000696_120 0.0403528547 - - PREDICTED: protein FD [Populus euphratica]
5 Hb_174829_030 0.0453644909 - - conserved hypothetical protein [Ricinus communis]
6 Hb_178968_010 0.0476894264 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
7 Hb_000917_220 0.0603637778 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
8 Hb_010080_040 0.060614624 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000053_150 0.0621872845 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
10 Hb_004342_040 0.0702346537 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
11 Hb_004137_090 0.075248313 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
12 Hb_122079_010 0.0761890068 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
13 Hb_001006_080 0.0778225522 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
14 Hb_003561_020 0.0811344339 - - gulonolactone oxidase, putative [Ricinus communis]
15 Hb_151027_010 0.090145251 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
16 Hb_018671_010 0.0909075173 - - -
17 Hb_002186_120 0.0953255371 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
18 Hb_000224_050 0.0959961985 - - conserved hypothetical protein [Ricinus communis]
19 Hb_061335_010 0.0965062364 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
20 Hb_000224_020 0.0999356818 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]

Gene co-expression network

sample Hb_003216_010 Hb_003216_010 Hb_005057_020 Hb_005057_020 Hb_003216_010--Hb_005057_020 Hb_003540_010 Hb_003540_010 Hb_003216_010--Hb_003540_010 Hb_000696_120 Hb_000696_120 Hb_003216_010--Hb_000696_120 Hb_174829_030 Hb_174829_030 Hb_003216_010--Hb_174829_030 Hb_178968_010 Hb_178968_010 Hb_003216_010--Hb_178968_010 Hb_000917_220 Hb_000917_220 Hb_003216_010--Hb_000917_220 Hb_004342_040 Hb_004342_040 Hb_005057_020--Hb_004342_040 Hb_000053_150 Hb_000053_150 Hb_005057_020--Hb_000053_150 Hb_005057_020--Hb_000696_120 Hb_122079_010 Hb_122079_010 Hb_005057_020--Hb_122079_010 Hb_005057_020--Hb_178968_010 Hb_003540_010--Hb_000917_220 Hb_003540_010--Hb_178968_010 Hb_003540_010--Hb_174829_030 Hb_004137_090 Hb_004137_090 Hb_003540_010--Hb_004137_090 Hb_003540_010--Hb_000053_150 Hb_000696_120--Hb_174829_030 Hb_001006_080 Hb_001006_080 Hb_000696_120--Hb_001006_080 Hb_010080_040 Hb_010080_040 Hb_000696_120--Hb_010080_040 Hb_000696_120--Hb_004342_040 Hb_151027_010 Hb_151027_010 Hb_174829_030--Hb_151027_010 Hb_174829_030--Hb_010080_040 Hb_174829_030--Hb_001006_080 Hb_178968_010--Hb_000053_150 Hb_018671_010 Hb_018671_010 Hb_178968_010--Hb_018671_010 Hb_178968_010--Hb_122079_010 Hb_002186_120 Hb_002186_120 Hb_178968_010--Hb_002186_120 Hb_000917_220--Hb_174829_030 Hb_000917_220--Hb_178968_010 Hb_000917_220--Hb_151027_010 Hb_000917_220--Hb_004137_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.477246 1.13526 6.08476 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis