Hb_010080_040

Information

Type -
Description -
Location Contig10080: 56498-57403
Sequence    

Annotation

kegg
ID rcu:RCOM_1600680
description hypothetical protein
nr
ID XP_002510653.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R8L0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1600680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00502: 56601-56790 , PASA_asmbl_00503: 56811-57516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010080_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000696_120 0.0475282437 - - PREDICTED: protein FD [Populus euphratica]
3 Hb_174829_030 0.0518750143 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001006_080 0.0606014028 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
5 Hb_003216_010 0.060614624 - - glycosyl hydrolase family protein [Populus trichocarpa]
6 Hb_003561_020 0.0751972496 - - gulonolactone oxidase, putative [Ricinus communis]
7 Hb_005057_020 0.0759382458 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
8 Hb_003540_010 0.0793294796 - - -
9 Hb_151027_010 0.0800166971 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
10 Hb_000917_220 0.0880738268 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
11 Hb_004342_040 0.0893115756 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
12 Hb_004137_090 0.0910047375 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
13 Hb_104362_020 0.0915535919 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_178968_010 0.0982876734 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
15 Hb_003878_130 0.1012549614 - - -
16 Hb_004899_380 0.1078640101 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000224_020 0.108129103 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
18 Hb_179367_010 0.1099238767 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
19 Hb_000053_150 0.1101773918 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
20 Hb_007290_010 0.1102977054 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_010080_040 Hb_010080_040 Hb_000696_120 Hb_000696_120 Hb_010080_040--Hb_000696_120 Hb_174829_030 Hb_174829_030 Hb_010080_040--Hb_174829_030 Hb_001006_080 Hb_001006_080 Hb_010080_040--Hb_001006_080 Hb_003216_010 Hb_003216_010 Hb_010080_040--Hb_003216_010 Hb_003561_020 Hb_003561_020 Hb_010080_040--Hb_003561_020 Hb_005057_020 Hb_005057_020 Hb_010080_040--Hb_005057_020 Hb_000696_120--Hb_174829_030 Hb_000696_120--Hb_001006_080 Hb_000696_120--Hb_003216_010 Hb_000696_120--Hb_005057_020 Hb_004342_040 Hb_004342_040 Hb_000696_120--Hb_004342_040 Hb_174829_030--Hb_003216_010 Hb_151027_010 Hb_151027_010 Hb_174829_030--Hb_151027_010 Hb_174829_030--Hb_001006_080 Hb_003540_010 Hb_003540_010 Hb_174829_030--Hb_003540_010 Hb_003878_130 Hb_003878_130 Hb_001006_080--Hb_003878_130 Hb_001006_080--Hb_151027_010 Hb_104362_020 Hb_104362_020 Hb_001006_080--Hb_104362_020 Hb_003216_010--Hb_005057_020 Hb_003216_010--Hb_003540_010 Hb_178968_010 Hb_178968_010 Hb_003216_010--Hb_178968_010 Hb_000917_220 Hb_000917_220 Hb_003216_010--Hb_000917_220 Hb_007290_010 Hb_007290_010 Hb_003561_020--Hb_007290_010 Hb_004137_090 Hb_004137_090 Hb_003561_020--Hb_004137_090 Hb_003561_020--Hb_003540_010 Hb_003561_020--Hb_003216_010 Hb_003561_020--Hb_000917_220 Hb_005057_020--Hb_004342_040 Hb_000053_150 Hb_000053_150 Hb_005057_020--Hb_000053_150 Hb_122079_010 Hb_122079_010 Hb_005057_020--Hb_122079_010 Hb_005057_020--Hb_178968_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.66312 5.23342 24.4261 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0451369 0 0 0.0916386

CAGE analysis