Hb_004137_090

Information

Type -
Description -
Location Contig4137: 43971-44597
Sequence    

Annotation

kegg
ID tcc:TCM_035439
description hypothetical protein
nr
ID XP_011027379.1
description PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A061FI83
description Uncharacterized protein OS=Theobroma cacao GN=TCM_035439 PE=4 SV=1
Gene Ontology
ID GO:0009834
description proline-rich receptor-like protein kinase perk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004137_090 0.0 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
2 Hb_003561_020 0.0493020617 - - gulonolactone oxidase, putative [Ricinus communis]
3 Hb_007290_010 0.0550447266 - - cytochrome P450, putative [Ricinus communis]
4 Hb_178968_010 0.0646944531 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
5 Hb_003540_010 0.0673671551 - - -
6 Hb_003216_010 0.075248313 - - glycosyl hydrolase family protein [Populus trichocarpa]
7 Hb_000053_150 0.076016353 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
8 Hb_018671_010 0.0784768179 - - -
9 Hb_000917_220 0.0797923982 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
10 Hb_002186_120 0.0815539682 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
11 Hb_005057_020 0.0875424677 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
12 Hb_010080_040 0.0910047375 - - conserved hypothetical protein [Ricinus communis]
13 Hb_122079_010 0.0924860626 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
14 Hb_000224_050 0.094200863 - - conserved hypothetical protein [Ricinus communis]
15 Hb_174829_030 0.0979271322 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000277_040 0.0995671291 - - -
17 Hb_010608_040 0.1019314435 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
18 Hb_004102_180 0.1031384582 - - zinc finger family protein [Populus trichocarpa]
19 Hb_000696_120 0.1032827797 - - PREDICTED: protein FD [Populus euphratica]
20 Hb_056718_010 0.1062127347 - - hypothetical protein JCGZ_11777 [Jatropha curcas]

Gene co-expression network

sample Hb_004137_090 Hb_004137_090 Hb_003561_020 Hb_003561_020 Hb_004137_090--Hb_003561_020 Hb_007290_010 Hb_007290_010 Hb_004137_090--Hb_007290_010 Hb_178968_010 Hb_178968_010 Hb_004137_090--Hb_178968_010 Hb_003540_010 Hb_003540_010 Hb_004137_090--Hb_003540_010 Hb_003216_010 Hb_003216_010 Hb_004137_090--Hb_003216_010 Hb_000053_150 Hb_000053_150 Hb_004137_090--Hb_000053_150 Hb_003561_020--Hb_007290_010 Hb_010080_040 Hb_010080_040 Hb_003561_020--Hb_010080_040 Hb_003561_020--Hb_003540_010 Hb_003561_020--Hb_003216_010 Hb_000917_220 Hb_000917_220 Hb_003561_020--Hb_000917_220 Hb_004102_180 Hb_004102_180 Hb_007290_010--Hb_004102_180 Hb_069384_010 Hb_069384_010 Hb_007290_010--Hb_069384_010 Hb_010608_040 Hb_010608_040 Hb_007290_010--Hb_010608_040 Hb_011218_010 Hb_011218_010 Hb_007290_010--Hb_011218_010 Hb_178968_010--Hb_000053_150 Hb_178968_010--Hb_003540_010 Hb_018671_010 Hb_018671_010 Hb_178968_010--Hb_018671_010 Hb_178968_010--Hb_003216_010 Hb_122079_010 Hb_122079_010 Hb_178968_010--Hb_122079_010 Hb_002186_120 Hb_002186_120 Hb_178968_010--Hb_002186_120 Hb_003540_010--Hb_000917_220 Hb_003540_010--Hb_003216_010 Hb_174829_030 Hb_174829_030 Hb_003540_010--Hb_174829_030 Hb_003540_010--Hb_000053_150 Hb_005057_020 Hb_005057_020 Hb_003216_010--Hb_005057_020 Hb_000696_120 Hb_000696_120 Hb_003216_010--Hb_000696_120 Hb_003216_010--Hb_174829_030 Hb_003216_010--Hb_000917_220 Hb_000053_150--Hb_122079_010 Hb_000053_150--Hb_005057_020 Hb_000053_150--Hb_018671_010 Hb_000053_150--Hb_002186_120 Hb_010812_080 Hb_010812_080 Hb_000053_150--Hb_010812_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.20753 2.85444 19.8712 0.0383429 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.144933

CAGE analysis