Hb_069384_010

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig69384: 100-534
Sequence    

Annotation

kegg
ID rcu:RCOM_1492640
description Auxin-responsive protein IAA27, putative
nr
ID XP_012073397.1
description PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
swissprot
ID Q9ZSY8
description Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1
trembl
ID A0A067KYE4
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_06321 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa27-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069384_010 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
2 Hb_004102_180 0.049333305 - - zinc finger family protein [Populus trichocarpa]
3 Hb_011218_010 0.0568764939 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
4 Hb_000186_090 0.0724027358 - - ACC oxidase 1 [Hevea brasiliensis]
5 Hb_007290_010 0.078467533 - - cytochrome P450, putative [Ricinus communis]
6 Hb_007292_020 0.079609451 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
7 Hb_000152_630 0.0802484548 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
8 Hb_000188_140 0.0822813687 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
9 Hb_002925_040 0.0849953004 desease resistance Gene Name: TIR hypothetical protein JCGZ_01545 [Jatropha curcas]
10 Hb_000230_220 0.0857352823 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002326_090 0.0876160519 - - amino acid transporter, putative [Ricinus communis]
12 Hb_000175_600 0.0883240674 - - PREDICTED: TATA-binding protein-associated factor 2N isoform X2 [Jatropha curcas]
13 Hb_007292_060 0.0890365892 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
14 Hb_000964_120 0.0904582578 - - DNA-damage-inducible protein f, putative [Ricinus communis]
15 Hb_003197_050 0.0955393559 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
16 Hb_003561_020 0.0979920873 - - gulonolactone oxidase, putative [Ricinus communis]
17 Hb_003777_150 0.1010576425 - - PREDICTED: uncharacterized protein LOC105640938 isoform X1 [Jatropha curcas]
18 Hb_000497_080 0.1028553882 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000959_170 0.1045567514 - - Cell division protein kinase 7, putative [Ricinus communis]
20 Hb_004137_090 0.1071704831 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]

Gene co-expression network

sample Hb_069384_010 Hb_069384_010 Hb_004102_180 Hb_004102_180 Hb_069384_010--Hb_004102_180 Hb_011218_010 Hb_011218_010 Hb_069384_010--Hb_011218_010 Hb_000186_090 Hb_000186_090 Hb_069384_010--Hb_000186_090 Hb_007290_010 Hb_007290_010 Hb_069384_010--Hb_007290_010 Hb_007292_020 Hb_007292_020 Hb_069384_010--Hb_007292_020 Hb_000152_630 Hb_000152_630 Hb_069384_010--Hb_000152_630 Hb_000175_600 Hb_000175_600 Hb_004102_180--Hb_000175_600 Hb_004102_180--Hb_011218_010 Hb_007292_060 Hb_007292_060 Hb_004102_180--Hb_007292_060 Hb_004102_180--Hb_007290_010 Hb_002326_090 Hb_002326_090 Hb_004102_180--Hb_002326_090 Hb_011218_010--Hb_007292_060 Hb_011218_010--Hb_000175_600 Hb_000964_120 Hb_000964_120 Hb_011218_010--Hb_000964_120 Hb_011218_010--Hb_002326_090 Hb_029508_040 Hb_029508_040 Hb_000186_090--Hb_029508_040 Hb_000710_130 Hb_000710_130 Hb_000186_090--Hb_000710_130 Hb_074100_010 Hb_074100_010 Hb_000186_090--Hb_074100_010 Hb_002277_020 Hb_002277_020 Hb_000186_090--Hb_002277_020 Hb_000188_140 Hb_000188_140 Hb_000186_090--Hb_000188_140 Hb_003561_020 Hb_003561_020 Hb_007290_010--Hb_003561_020 Hb_004137_090 Hb_004137_090 Hb_007290_010--Hb_004137_090 Hb_010608_040 Hb_010608_040 Hb_007290_010--Hb_010608_040 Hb_007290_010--Hb_011218_010 Hb_007292_020--Hb_004102_180 Hb_007292_020--Hb_011218_010 Hb_007292_020--Hb_000186_090 Hb_000224_050 Hb_000224_050 Hb_007292_020--Hb_000224_050 Hb_007292_020--Hb_007290_010 Hb_000152_630--Hb_000188_140 Hb_000230_220 Hb_000230_220 Hb_000152_630--Hb_000230_220 Hb_000152_630--Hb_004102_180 Hb_000087_160 Hb_000087_160 Hb_000152_630--Hb_000087_160 Hb_116349_080 Hb_116349_080 Hb_000152_630--Hb_116349_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.289088 39.4596 76.0469 584.223 0.963145 1.03862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1705 0 0.439171 6.22391 20.0565

CAGE analysis