Hb_000964_120

Information

Type -
Description -
Location Contig964: 108157-111448
Sequence    

Annotation

kegg
ID rcu:RCOM_0492910
description DNA-damage-inducible protein f, putative
nr
ID XP_002532163.1
description DNA-damage-inducible protein f, putative [Ricinus communis]
swissprot
ID Q9SFB0
description MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1
trembl
ID B9T1P4
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0492910 PE=3 SV=1
Gene Ontology
ID GO:0005623
description mate efflux family protein frd3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63856: 108743-109912 , PASA_asmbl_63857: 108717-109912 , PASA_asmbl_63858: 110355-111663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000964_120 0.0 - - DNA-damage-inducible protein f, putative [Ricinus communis]
2 Hb_007292_060 0.0573417555 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
3 Hb_002326_090 0.0701513213 - - amino acid transporter, putative [Ricinus communis]
4 Hb_001006_300 0.0775298142 - - lipid binding protein, putative [Ricinus communis]
5 Hb_003197_050 0.079211356 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
6 Hb_011218_010 0.0799598 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
7 Hb_090210_010 0.080378274 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
8 Hb_000155_030 0.0827063102 - - PREDICTED: uncharacterized protein LOC105649591 [Jatropha curcas]
9 Hb_017061_010 0.082780351 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
10 Hb_000175_600 0.0851488956 - - PREDICTED: TATA-binding protein-associated factor 2N isoform X2 [Jatropha curcas]
11 Hb_025557_090 0.0859414289 - - hypothetical protein glysoja_034865 [Glycine soja]
12 Hb_001898_030 0.08674134 - - protein kinase-coding resistance protein [Nicotiana repanda]
13 Hb_116349_080 0.0867743174 - - Nectarin-1 precursor, putative [Ricinus communis]
14 Hb_004102_180 0.0882662109 - - zinc finger family protein [Populus trichocarpa]
15 Hb_136944_010 0.0903610709 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
16 Hb_069384_010 0.0904582578 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
17 Hb_003858_070 0.0942289518 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
18 Hb_006970_180 0.0955320486 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
19 Hb_006603_010 0.0960178656 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
20 Hb_003152_010 0.0962992439 - - -

Gene co-expression network

sample Hb_000964_120 Hb_000964_120 Hb_007292_060 Hb_007292_060 Hb_000964_120--Hb_007292_060 Hb_002326_090 Hb_002326_090 Hb_000964_120--Hb_002326_090 Hb_001006_300 Hb_001006_300 Hb_000964_120--Hb_001006_300 Hb_003197_050 Hb_003197_050 Hb_000964_120--Hb_003197_050 Hb_011218_010 Hb_011218_010 Hb_000964_120--Hb_011218_010 Hb_090210_010 Hb_090210_010 Hb_000964_120--Hb_090210_010 Hb_007292_060--Hb_002326_090 Hb_007292_060--Hb_090210_010 Hb_000175_600 Hb_000175_600 Hb_007292_060--Hb_000175_600 Hb_004102_180 Hb_004102_180 Hb_007292_060--Hb_004102_180 Hb_007292_060--Hb_011218_010 Hb_002326_090--Hb_000175_600 Hb_002326_090--Hb_090210_010 Hb_002326_090--Hb_004102_180 Hb_001898_030 Hb_001898_030 Hb_002326_090--Hb_001898_030 Hb_017061_010 Hb_017061_010 Hb_001006_300--Hb_017061_010 Hb_003858_070 Hb_003858_070 Hb_001006_300--Hb_003858_070 Hb_001006_300--Hb_001898_030 Hb_013399_060 Hb_013399_060 Hb_001006_300--Hb_013399_060 Hb_005144_150 Hb_005144_150 Hb_001006_300--Hb_005144_150 Hb_116349_080 Hb_116349_080 Hb_003197_050--Hb_116349_080 Hb_000155_030 Hb_000155_030 Hb_003197_050--Hb_000155_030 Hb_000230_220 Hb_000230_220 Hb_003197_050--Hb_000230_220 Hb_000497_080 Hb_000497_080 Hb_003197_050--Hb_000497_080 Hb_000934_120 Hb_000934_120 Hb_003197_050--Hb_000934_120 Hb_011218_010--Hb_004102_180 Hb_069384_010 Hb_069384_010 Hb_011218_010--Hb_069384_010 Hb_011218_010--Hb_000175_600 Hb_011218_010--Hb_002326_090 Hb_153258_030 Hb_153258_030 Hb_090210_010--Hb_153258_030 Hb_000731_180 Hb_000731_180 Hb_090210_010--Hb_000731_180 Hb_000796_110 Hb_000796_110 Hb_090210_010--Hb_000796_110 Hb_002999_020 Hb_002999_020 Hb_090210_010--Hb_002999_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0126141 0.177486 0.624022 5.26031 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0540571 0.331829

CAGE analysis