Hb_003197_050

Information

Type -
Description -
Location Contig3197: 67727-68008
Sequence    

Annotation

kegg
ID tcc:TCM_033863
description Calcium-binding EF-hand family protein, putative
nr
ID KDP38354.1
description hypothetical protein JCGZ_04279 [Jatropha curcas]
swissprot
ID P04630
description Calmodulin-like protein OS=Caenorhabditis elegans GN=cal-1 PE=3 SV=1
trembl
ID A0A067L2M6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04279 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding ef-hand family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003197_050 0.0 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
2 Hb_116349_080 0.0424540244 - - Nectarin-1 precursor, putative [Ricinus communis]
3 Hb_000155_030 0.0506783473 - - PREDICTED: uncharacterized protein LOC105649591 [Jatropha curcas]
4 Hb_000230_220 0.0709577417 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000964_120 0.079211356 - - DNA-damage-inducible protein f, putative [Ricinus communis]
6 Hb_000497_080 0.0795214287 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000934_120 0.0858843217 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
8 Hb_003598_050 0.0863851581 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
9 Hb_025557_090 0.0867947012 - - hypothetical protein glysoja_034865 [Glycine soja]
10 Hb_009158_010 0.0906539132 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
11 Hb_007292_060 0.092696252 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
12 Hb_136944_010 0.0938609059 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
13 Hb_090210_010 0.0938696011 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
14 Hb_004102_180 0.094081342 - - zinc finger family protein [Populus trichocarpa]
15 Hb_011218_010 0.0950053304 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
16 Hb_069384_010 0.0955393559 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
17 Hb_112950_010 0.0959745417 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
18 Hb_006351_050 0.0965803605 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
19 Hb_000152_630 0.097132542 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
20 Hb_002326_090 0.0977255912 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_003197_050 Hb_003197_050 Hb_116349_080 Hb_116349_080 Hb_003197_050--Hb_116349_080 Hb_000155_030 Hb_000155_030 Hb_003197_050--Hb_000155_030 Hb_000230_220 Hb_000230_220 Hb_003197_050--Hb_000230_220 Hb_000964_120 Hb_000964_120 Hb_003197_050--Hb_000964_120 Hb_000497_080 Hb_000497_080 Hb_003197_050--Hb_000497_080 Hb_000934_120 Hb_000934_120 Hb_003197_050--Hb_000934_120 Hb_116349_080--Hb_000155_030 Hb_025557_090 Hb_025557_090 Hb_116349_080--Hb_025557_090 Hb_009158_010 Hb_009158_010 Hb_116349_080--Hb_009158_010 Hb_116349_080--Hb_000230_220 Hb_003598_050 Hb_003598_050 Hb_116349_080--Hb_003598_050 Hb_000155_030--Hb_025557_090 Hb_000155_030--Hb_009158_010 Hb_000155_030--Hb_000964_120 Hb_000155_030--Hb_000230_220 Hb_000152_630 Hb_000152_630 Hb_000230_220--Hb_000152_630 Hb_000188_140 Hb_000188_140 Hb_000230_220--Hb_000188_140 Hb_000230_220--Hb_025557_090 Hb_007292_060 Hb_007292_060 Hb_000964_120--Hb_007292_060 Hb_002326_090 Hb_002326_090 Hb_000964_120--Hb_002326_090 Hb_001006_300 Hb_001006_300 Hb_000964_120--Hb_001006_300 Hb_011218_010 Hb_011218_010 Hb_000964_120--Hb_011218_010 Hb_090210_010 Hb_090210_010 Hb_000964_120--Hb_090210_010 Hb_006351_050 Hb_006351_050 Hb_000497_080--Hb_006351_050 Hb_000497_080--Hb_003598_050 Hb_180088_010 Hb_180088_010 Hb_000497_080--Hb_180088_010 Hb_001500_020 Hb_001500_020 Hb_000497_080--Hb_001500_020 Hb_017061_010 Hb_017061_010 Hb_000497_080--Hb_017061_010 Hb_000796_110 Hb_000796_110 Hb_000934_120--Hb_000796_110 Hb_001775_140 Hb_001775_140 Hb_000934_120--Hb_001775_140 Hb_016911_010 Hb_016911_010 Hb_000934_120--Hb_016911_010 Hb_051212_020 Hb_051212_020 Hb_000934_120--Hb_051212_020 Hb_009062_020 Hb_009062_020 Hb_000934_120--Hb_009062_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.373853 19.3463 58.3203 343.514 0 0.361092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.647455 26.3185

CAGE analysis